Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_F08
         (440 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20247| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)                28   3.9  
SB_47532| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_27890| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_17563| Best HMM Match : DEAD (HMM E-Value=0)                        27   6.9  
SB_2247| Best HMM Match : DEAD (HMM E-Value=0)                         27   6.9  
SB_59430| Best HMM Match : Extensin_2 (HMM E-Value=7.9)                27   9.1  
SB_8393| Best HMM Match : DUF662 (HMM E-Value=3.9e-26)                 27   9.1  
SB_6006| Best HMM Match : Annexin (HMM E-Value=2.4e-25)                27   9.1  

>SB_20247| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
          Length = 356

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 439 SFLATXRLRSQSGFLGAKLVMSRSWRTTFSLPASNKSFTSSS 314
           +F  T R  SQS F  + +  S+S  TT   P S  +FT+++
Sbjct: 40  TFTTTARPNSQSTFTTSDIPNSQSTFTTSERPNSQSTFTTTA 81


>SB_47532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 240 KFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAGKEKV 359
           K RS K   E   E K    +PT+ ++E KD+  AGK+ V
Sbjct: 313 KGRSRKMLGEKKAEGKRVVNKPTIAKQEHKDMNLAGKDAV 352


>SB_27890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -2

Query: 421 RLRSQSGFLGAKLVMSRSWRTTFSLPASNKSFTS 320
           RLR+Q+ +L A L +S    T F++PA+ + F +
Sbjct: 217 RLRTQTNYLIANLAISDFVMTIFTMPATLEVFVT 250


>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 439

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/53 (22%), Positives = 21/53 (39%)
 Frame = -2

Query: 433 LATXRLRSQSGFLGAKLVMSRSWRTTFSLPASNKSFTSSSITVGSASLSLDSC 275
           +A  +  +      + L  S SW+    LP  +  F +S +T    +   D C
Sbjct: 1   MAAAKTEAAVSVANSNLENSESWKANLKLPPKDNRFKTSDVTATKGNEFEDYC 53


>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 439

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/53 (22%), Positives = 21/53 (39%)
 Frame = -2

Query: 433 LATXRLRSQSGFLGAKLVMSRSWRTTFSLPASNKSFTSSSITVGSASLSLDSC 275
           +A  +  +      + L  S SW+    LP  +  F +S +T    +   D C
Sbjct: 1   MAAAKTEAAVSVANSNLENSESWKANLKLPPKDNRFKTSDVTATKGNEFEDYC 53


>SB_59430| Best HMM Match : Extensin_2 (HMM E-Value=7.9)
          Length = 442

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 123 SYRQILHCPLLPYLLRGVS-TYLIYA 49
           SYR  +H PL PY  RG S  YL+++
Sbjct: 68  SYRYPMHSPLPPYNTRGYSYRYLMHS 93


>SB_8393| Best HMM Match : DUF662 (HMM E-Value=3.9e-26)
          Length = 319

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 231 PKPKFRSYKPQDEALQESKLNDAEPTVIEE 320
           P  K +  KP    L+E K  D EP +I E
Sbjct: 98  PDSKIQEEKPSSVELEEQKQMDTEPEMITE 127


>SB_6006| Best HMM Match : Annexin (HMM E-Value=2.4e-25)
          Length = 803

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +3

Query: 225 TLPKPKFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAGKEKVVLQD 371
           T  K K    + + + L +  LN+   +V++EE+   LE+  E+  ++D
Sbjct: 32  TSEKDKMNKLEDKYKDLYKKDLNEELKSVLDEEIMKALESLAEEAAMKD 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,535,821
Number of Sequences: 59808
Number of extensions: 152061
Number of successful extensions: 507
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)