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Last updated: 2022/09/19
 
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_A21
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  

>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +3

Query: 339  NQQGQD*VEQSMAMAEPEVDFMLELRQVATSKQKLVLQEE*LQKT*QAMDLQLLKQE 509
            N    + ++Q +A  + EVD  +E      S+Q+  LQ++  +K  + ++ Q  KQE
Sbjct: 4260 NNMSPEELQQLLAQHQQEVDDAMEKLDADRSRQQSSLQQKLAEKRRKKLEAQKRKQE 4316


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,174,510
Number of Sequences: 59808
Number of extensions: 194179
Number of successful extensions: 387
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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