SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c03f
         (607 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)                 46   2e-05
SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)                46   2e-05
SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12)                46   2e-05
SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19)                44   7e-05
SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)              36   0.019
SB_40386| Best HMM Match : BAR (HMM E-Value=0)                         33   0.18 
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.24 
SB_42860| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_32006| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)           28   6.7  
SB_27122| Best HMM Match : I-set (HMM E-Value=1.9e-39)                 28   6.7  
SB_49216| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_55435| Best HMM Match : RVT_1 (HMM E-Value=7.9e-22)                 27   8.9  
SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_49303| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0037)          27   8.9  
SB_47063| Best HMM Match : APOBEC_C (HMM E-Value=0.41)                 27   8.9  
SB_47062| Best HMM Match : APOBEC_C (HMM E-Value=4.5)                  27   8.9  
SB_46566| Best HMM Match : APOBEC_C (HMM E-Value=4.5)                  27   8.9  
SB_45426| Best HMM Match : APOBEC_C (HMM E-Value=4.5)                  27   8.9  
SB_43798| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_43614| Best HMM Match : APOBEC_C (HMM E-Value=4.5)                  27   8.9  
SB_31068| Best HMM Match : DUF240 (HMM E-Value=2.1)                    27   8.9  
SB_26582| Best HMM Match : APOBEC_C (HMM E-Value=4.5)                  27   8.9  
SB_21916| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_18259| Best HMM Match : APOBEC_C (HMM E-Value=4.5)                  27   8.9  
SB_15817| Best HMM Match : APOBEC_C (HMM E-Value=0.41)                 27   8.9  
SB_6637| Best HMM Match : Phage_integr_N (HMM E-Value=1.4)             27   8.9  
SB_2753| Best HMM Match : APOBEC_C (HMM E-Value=4.5)                   27   8.9  
SB_1614| Best HMM Match : APOBEC_C (HMM E-Value=4.5)                   27   8.9  
SB_59032| Best HMM Match : APOBEC_C (HMM E-Value=4.5)                  27   8.9  
SB_56361| Best HMM Match : APOBEC_C (HMM E-Value=4.5)                  27   8.9  
SB_46231| Best HMM Match : APOBEC_C (HMM E-Value=4.5)                  27   8.9  
SB_45162| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_44595| Best HMM Match : APOBEC_C (HMM E-Value=4.5)                  27   8.9  
SB_37211| Best HMM Match : APOBEC_C (HMM E-Value=4.5)                  27   8.9  
SB_31191| Best HMM Match : APOBEC_C (HMM E-Value=4.5)                  27   8.9  
SB_18421| Best HMM Match : APOBEC_C (HMM E-Value=4.5)                  27   8.9  
SB_9226| Best HMM Match : APOBEC_C (HMM E-Value=4.5)                   27   8.9  
SB_9027| Best HMM Match : Phage_fiber_2 (HMM E-Value=5.8)              27   8.9  

>SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)
          Length = 109

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = +1

Query: 205 AEGLWRV-HNGIYNFNDFLEKHPGGAEWLELSKGTDITEAFESHHLNSSVNKVLEKYYVR 381
           A G W V HN +++   FL++HPGG E L    G D +E+FE    +S   +++ +Y + 
Sbjct: 21  AGGCWLVIHNKVFDVTKFLDEHPGGEEVLLEQAGGDASESFEDVGHSSDARELMNEYCIG 80

Query: 382 EAK 390
           E +
Sbjct: 81  ELR 83


>SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)
          Length = 172

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = +1

Query: 205 AEGLWRV-HNGIYNFNDFLEKHPGGAEWLELSKGTDITEAFESHHLNSSVNKVLEKYYVR 381
           A G W V HN +++   FL++HPGG E L    G D +E+FE    +S   +++ +Y + 
Sbjct: 21  AGGCWLVIHNKVFDVTKFLDEHPGGEEVLLEQAGGDASESFEDVGHSSDARELMNEYCIG 80

Query: 382 EAK 390
           E +
Sbjct: 81  ELR 83


>SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12)
          Length = 303

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
 Frame = +1

Query: 199 DGAEGLWRVH-NGIYNFNDFLEKHPGGAEWLELSKGTDITEAFESH--HLNSSVNKVLEK 369
           D   G+W  + +G+Y+  DF+E+HPGG + + L+ G+ +   +  H  H    + K+L +
Sbjct: 168 DARHGVWTTYEDGVYDLTDFIEQHPGGKKMIMLAAGSRLDPYWNIHDFHKRDDIVKILSE 227

Query: 370 YYV---REAKTPRNSPFTFEDDGFYRTLKR 450
           + +   R+ K   ++     DD + R  KR
Sbjct: 228 FRIGSLRKEKIKASTGLNL-DDPYSRDPKR 256


>SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19)
          Length = 167

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = +1

Query: 181 IGKSMDDGAEGLWRVHNG-IYNFNDFLEKHPGGAEWLELSKGTDITEAFESHHLN 342
           IG+   DG   LW +H+G +Y+ + F E+HPGG + L L+ G D+T    +  ++
Sbjct: 15  IGRHKSDG--DLWVIHSGKVYDISKFSERHPGGKDVLLLNSGQDVTSIMSNGEIH 67


>SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +1

Query: 223 VHNGIYNFNDFLEKHPGGAEWLELSKGTDITEAFESHH 336
           +H  +Y+  +FL +HPGG E L +  G D+T  FE++H
Sbjct: 43  IHGKVYDVTNFLLRHPGGKELLLIGAGRDVTLVFETYH 80


>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
          Length = 672

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +1

Query: 214 LWRVHNG-IYNFNDFLEKHPGGAEWLELSKGTDITE--AFESHHLNSSVNKVLEKYYVRE 384
           +W  + G +Y+  DF++ HPGG   + L+ G  +    A  + H    V ++LE+Y + +
Sbjct: 219 IWVTYKGGVYDITDFIDGHPGGTSKIILAAGAALEPYWAMYAVHKKEEVLEILEEYRIGD 278

Query: 385 AKTPRNSPFTFEDDGF 432
                      EDD F
Sbjct: 279 LAHEDQVIEFKEDDPF 294


>SB_40386| Best HMM Match : BAR (HMM E-Value=0)
          Length = 369

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +1

Query: 43  NMAPKNVEYIEIAHRRAAEKKTHVSFPQLKYPSLRDEGLRDPVQWLIGKSMDDGAEG 213
           N+ PK  EY++      A+ K H++ P  KYP    EGL   V  L G+ +    +G
Sbjct: 51  NLTPKTKEYLQPNATYNAKVKMHMTQPDEKYP--YTEGLMGDVMMLAGQEIGQVGKG 105


>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2332

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 349  VNKVLEKYYVREAKTPRNSPFTFEDDGFYRTLKRAVVEELKKVPK 483
            ++KV  K      KTPR SP    DDG  R   R   +++ + P+
Sbjct: 1120 LSKVSRKVRKASLKTPRPSPGKLRDDGITRPASRVSAQQISRKPR 1164


>SB_42860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 64  EYIEIAHRRAAEKKTHVSFPQLKYPSLRDEG 156
           E   IA R  AEK++H +F  +K+PS+ + G
Sbjct: 118 ERSSIAKRTMAEKESHSTFRIIKFPSVPEAG 148


>SB_32006| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)
          Length = 497

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 292 LSKGTDITEAFESHHLNSSVNKVLEKY 372
           +S G D+T   E H LN  + + L+KY
Sbjct: 248 VSHGVDVTNLPEDHRLNVIIREYLDKY 274


>SB_27122| Best HMM Match : I-set (HMM E-Value=1.9e-39)
          Length = 378

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 221 RHKPSAPS-SMDFPINHCTGSLNPSSLSEGYLS 126
           ++KPS  S S D  +N  TGSL  + +S+GY S
Sbjct: 203 KYKPSILSKSPDQTVNETTGSLKLTCISDGYPS 235


>SB_49216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 773

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 423 IFKSKRRIPRCFSFPNVIFLENFIHR 346
           ++ S    P CF+ PN I LE  +HR
Sbjct: 280 VYISSNESPNCFTSPNPIMLEPRMHR 305


>SB_55435| Best HMM Match : RVT_1 (HMM E-Value=7.9e-22)
          Length = 726

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 45  SHGVDVTNLPEDHRLNVIIREYLDKY 70


>SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1214

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 151 SHGVDVTNLPEDHRLNVIIREYLDKY 176


>SB_49303| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0037)
          Length = 722

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 201 SHGVDVTNLPEDHRLNVIIREYLDKY 226


>SB_47063| Best HMM Match : APOBEC_C (HMM E-Value=0.41)
          Length = 430

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 221 SHGVDVTNLPEDHRLNVIIREYLDKY 246


>SB_47062| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
          Length = 249

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 139 SHGVDVTNLPEDHRLNVIIREYLDKY 164


>SB_46566| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
          Length = 240

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 196 SHGVDVTNLPEDHRLNVIIREYLDKY 221


>SB_45426| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
          Length = 173

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 79  SHGVDVTNLPEDHRLNVIIREYLDKY 104


>SB_43798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 240 SHGVDVTNLPEDHRLNVIIREYLDKY 265


>SB_43614| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
          Length = 168

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 79  SHGVDVTNLPEDHRLNVIIREYLDKY 104


>SB_31068| Best HMM Match : DUF240 (HMM E-Value=2.1)
          Length = 453

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 205 SHGVDVTNLPEDHRLNVIIREYLDKY 230


>SB_26582| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
          Length = 189

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 79  SHGVDVTNLPEDHRLNVIIREYLDKY 104


>SB_21916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 45  SHGVDVTNLPEDHRLNVIIREYLDKY 70


>SB_18259| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
          Length = 81

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 45  SHGVDVTNLPEDHRLNVIIREYLDKY 70


>SB_15817| Best HMM Match : APOBEC_C (HMM E-Value=0.41)
          Length = 248

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 45  SHGVDVTNLPEDHRLNVIIREYLDKY 70


>SB_6637| Best HMM Match : Phage_integr_N (HMM E-Value=1.4)
          Length = 397

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 287 SHGVDVTNLPEDHRLNVIIREYLDKY 312


>SB_2753| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
          Length = 134

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 45  SHGVDVTNLPEDHRLNVIIREYLDKY 70


>SB_1614| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
          Length = 123

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 79  SHGVDVTNLPEDHRLNVIIREYLDKY 104


>SB_59032| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
          Length = 123

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 79  SHGVDVTNLPEDHRLNVIIREYLDKY 104


>SB_56361| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
          Length = 274

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 218 SHGVDVTNLPEDHRLNVIIREYLDKY 243


>SB_46231| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
          Length = 89

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 45  SHGVDVTNLPEDHRLNVIIREYLDKY 70


>SB_45162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 12  SHGVDVTNLPEDHRLNVIIREYLDKY 37


>SB_44595| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
          Length = 134

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 45  SHGVDVTNLPEDHRLNVIIREYLDKY 70


>SB_37211| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
          Length = 301

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 205 SHGVDVTNLPEDHRLNVIIREYLDKY 230


>SB_31191| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
          Length = 133

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 89  SHGVDVTNLPEDHRLNVIIREYLDKY 114


>SB_18421| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
          Length = 89

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 45  SHGVDVTNLPEDHRLNVIIREYLDKY 70


>SB_9226| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
          Length = 262

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 218 SHGVDVTNLPEDHRLNVIIREYLDKY 243


>SB_9027| Best HMM Match : Phage_fiber_2 (HMM E-Value=5.8)
          Length = 320

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 SKGTDITEAFESHHLNSSVNKVLEKY 372
           S G D+T   E H LN  + + L+KY
Sbjct: 231 SHGVDVTNLPEDHRLNVIIREYLDKY 256


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,409,143
Number of Sequences: 59808
Number of extensions: 362450
Number of successful extensions: 1012
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -