Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b17r
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4502| Best HMM Match : SpoIIIAC (HMM E-Value=2.8)                   30   1.7  
SB_37583| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_50198| Best HMM Match : Frizzled (HMM E-Value=0)                    28   9.2  

>SB_4502| Best HMM Match : SpoIIIAC (HMM E-Value=2.8)
          Length = 82

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +2

Query: 440 TLCLLICLSILVHDQ*SNFAHNHRHLHFYY--ILFLYHNY 553
           T+ ++I ++I++ +   N  H++ HL+ YY   +  Y+NY
Sbjct: 30  TIVIIITITIIIINHYPNHRHDYHHLYQYYYPAIATYYNY 69


>SB_37583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +2

Query: 440 TLCLLICLSILVHDQ*SNFAHNHRHLHFYYILFLYHNY 553
           T+ +++ LSI++    +   + HRH H+Y+I   +H +
Sbjct: 19  TITIIVILSIIIIMTINTTFNCHRHHHYYHIYDYHHQH 56


>SB_50198| Best HMM Match : Frizzled (HMM E-Value=0)
          Length = 654

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = -1

Query: 548 YDTKKEYNKNGGVCDYGRSLIIDRELV*TNKSGGTRSDQLACKIAFLFVIFFVSFSGLYW 369
           Y  +    +N  +CD   S +I        ++G   +D   C + FL + +F   S ++W
Sbjct: 320 YIVRVTAGRNEVICDETESFVI--------RAGMNIADHACCSVVFLLLYYFGMASAVWW 371

Query: 368 I 366
           +
Sbjct: 372 V 372


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,376,581
Number of Sequences: 59808
Number of extensions: 349261
Number of successful extensions: 620
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)