Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b15r
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022)                    75   6e-14
SB_31891| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   1e-10
SB_19356| Best HMM Match : Cucumo_2B (HMM E-Value=7.3)                 45   5e-05
SB_44806| Best HMM Match : Hist_deacetyl (HMM E-Value=0)               29   4.9  
SB_54641| Best HMM Match : Cytochrom_B562 (HMM E-Value=5.4)            29   4.9  
SB_14527| Best HMM Match : SAP (HMM E-Value=1.6e-13)                   28   8.6  

>SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022)
          Length = 616

 Score = 74.9 bits (176), Expect = 6e-14
 Identities = 56/140 (40%), Positives = 70/140 (50%), Gaps = 7/140 (5%)
 Frame = -1

Query: 623 LRKIWFTKYARHWTGLCKCSCAFENVFMAEL----KSNE--VLGLHSWLFFAKRELDHKA 462
           L KIWF  Y R   G  + S  FE+VF+ E     KS +  V G HSWL F  +E    A
Sbjct: 7   LYKIWFYFYNR---GAYRDSSGFEHVFVGEKYDDSKSGKKIVKGYHSWLQFYLQEKRRDA 63

Query: 461 NYLGYIDKLDLSGKGLILKQHSVLSETKDAPEVNMFVGTSPELETALYTLCFMTRPDRPC 282
           +Y GY        +GL LK         D    + F+GTSPE E +LYT CF  RP + C
Sbjct: 64  DYHGYYALSTSEPRGLKLKFDV---NNYDKVVSSFFLGTSPEFEFSLYTACFYLRPGQEC 120

Query: 281 RLRFNNIPFTIQTK-SIKVE 225
             R N+    I+TK SI +E
Sbjct: 121 TCRINSQTIKIRTKASIAME 140


>SB_31891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 15/150 (10%)
 Frame = -1

Query: 707 TGPIRSLITFLVNKGITQLNEYPEQVELLRKIWFTKYARHWTGLCKCSCAFENVFMAELK 528
           TGP+     FL  KG+   ++ P   + L ++WF  Y R      K S  FE+VF+ E +
Sbjct: 97  TGPMEIAHKFLAGKGLVP-SDRPGFKKKLYQMWFELYQRTRGCRVKDSSGFEHVFVGETR 155

Query: 527 -SNEVLGLHSWLFFAKRELDHKANYLGYIDKLDLSGKGLILKQHSVLSETKDA------- 372
              EV+G H+W+ F  +E     +Y G+    +      ++++       K+        
Sbjct: 156 GKEEVIGFHNWIQFYLQEKAGVVDYKGFFPNRNSFNITPVMQKRMSTDAMKECQLVTIQF 215

Query: 371 -------PEVNMFVGTSPELETALYTLCFM 303
                  P  + F+GTSPE E ALYT+CF+
Sbjct: 216 SWKSGVKPIGSSFIGTSPEFEMALYTVCFL 245


>SB_19356| Best HMM Match : Cucumo_2B (HMM E-Value=7.3)
          Length = 194

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 24/63 (38%), Positives = 31/63 (49%)
 Frame = -1

Query: 383 TKDAPEVNMFVGTSPELETALYTLCFMTRPDRPCRLRFNNIPFTIQTKSIKVENLPVIDT 204
           T   P    FVGTSPE E +LYT CF+  P+  C  + N     I T   +     ++ T
Sbjct: 132 TVQKPIGGFFVGTSPEFELSLYTTCFLKYPNGKCTCQMNGKKVKIVT--YRDRRTSLVAT 189

Query: 203 AYP 195
           AYP
Sbjct: 190 AYP 192


>SB_44806| Best HMM Match : Hist_deacetyl (HMM E-Value=0)
          Length = 496

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 563 CAFENVFMAELKSNEVLGLHSWLFFAKRELDHKANYLGYIDK--LDLSGKG 417
           C F NV +A   + +  G+ S L+F+    DH AN+  +  +   D+ GKG
Sbjct: 326 CFFNNVAIAAKLAQQRWGMQSVLYFSLHRYDH-ANFYPFSAQANYDIVGKG 375


>SB_54641| Best HMM Match : Cytochrom_B562 (HMM E-Value=5.4)
          Length = 235

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 281 RLRFNNIPFTIQTKSIKVENLPVIDTAYPTW*KNNI*KDKQVF 153
           R  FNN+   ++ KS+  +NL +       W +NNI K  +++
Sbjct: 120 RDEFNNLKTQVEEKSVLADNLQLQAKNLQVWVENNIDKYSELY 162


>SB_14527| Best HMM Match : SAP (HMM E-Value=1.6e-13)
          Length = 347

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/38 (47%), Positives = 20/38 (52%)
 Frame = +2

Query: 134 YSSSFKRRLVCLFKYYFFTKLGKRCQ*PVSFRL*SILF 247
           Y  SF   L+C F  YFFT L KR     S+ L S LF
Sbjct: 280 YLVSFTPNLICCF-IYFFTPLDKRGSSMPSYFLWSELF 316


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,044,749
Number of Sequences: 59808
Number of extensions: 436260
Number of successful extensions: 1259
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)