Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b13r
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31528| Best HMM Match : DDHD (HMM E-Value=2e-29)                    32   0.56 
SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_54569| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0018)          29   3.0  
SB_17727| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)         29   3.0  
SB_23474| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)         29   3.0  
SB_51284| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_31528| Best HMM Match : DDHD (HMM E-Value=2e-29)
          Length = 1123

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 18/60 (30%), Positives = 34/60 (56%)
 Frame = +1

Query: 382 TNQEKNFQLLISCYSIITKKIANN*TKLLKNDYSIRNIDNYNNFSCTELTLPFILFKNNS 561
           T+++ +F+++ +  ++   K+ NN T++ KN   + NI      S TE+T   IL  NN+
Sbjct: 815 TSEDMDFEMMSTIKNLT--KMTNNTTEMTKNTTEMTNITTEMPNSTTEMTNNTILMTNNN 872


>SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2028

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +1

Query: 385 NQEKNFQLLISCYSIITKKIANN*TKLLKNDYSIRNIDNYNNFS 516
           N E+N  +++    IIT+ I +N T+   + Y+++ ID+ N FS
Sbjct: 847 NTEQN-GIILGYKIIITETIQSNKTRSFSSFYTVQQIDHLNKFS 889


>SB_54569| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0018)
          Length = 292

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = +1

Query: 394 KNFQLLISCYSIITKK---IANN*TKLLKNDYSIRNID--NYNNF 513
           KNF LL     +I  K   IA   TKL  NDYS++NI+  NYN F
Sbjct: 99  KNFDLLEDILYLIDSKPQIIAVTETKL--NDYSVKNINFKNYNFF 141


>SB_17727| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)
          Length = 648

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = +1

Query: 394 KNFQLLISCYSIITKK---IANN*TKLLKNDYSIRNID--NYNNF 513
           KNF LL     +I  K   IA   TKL  NDYS++NI+  NYN F
Sbjct: 99  KNFDLLEDILYLIDSKPQIIAVTETKL--NDYSVKNINFKNYNFF 141


>SB_23474| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)
          Length = 623

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = +1

Query: 394 KNFQLLISCYSIITKK---IANN*TKLLKNDYSIRNID--NYNNF 513
           KNF LL     +I  K   IA   TKL  NDYS++NI+  NYN F
Sbjct: 301 KNFDLLEDILYLIDSKPQIIAVTETKL--NDYSVKNINFKNYNFF 343


>SB_51284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 221 CHWRAWNLALT*GSVTKVSRFDTYTNWMTSELGLNPKIHTY 99
           CHW+  N   T GSV+    F+ + N +   L   P +  Y
Sbjct: 475 CHWKCVNRGTTQGSVSSPYLFNIFINDLEINLCNQPALFKY 515


>SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1483

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 352 YYRVFYLIKNTNQEKNFQLLISCYSIITKKI 444
           +Y VFY +K     K   ++ SC + I +K+
Sbjct: 759 FYEVFYFLKGVRYPKKCAIIPSCVNYIQRKL 789


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,866,613
Number of Sequences: 59808
Number of extensions: 305633
Number of successful extensions: 652
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)