Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b03r
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               82   5e-16
SB_48173| Best HMM Match : WD40 (HMM E-Value=7.3e-18)                  30   1.7  
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_3148| Best HMM Match : Keratin_B2 (HMM E-Value=0.26)                28   6.8  
SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)                28   9.0  
SB_37525| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_28143| Best HMM Match : Neur_chan_memb (HMM E-Value=2.2)            28   9.0  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 46/113 (40%), Positives = 60/113 (53%)
 Frame = -2

Query: 340 PFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDDIF 161
           PF  N  PLRRIPQ YVI TST I + + KLP+H     F             K  +D+F
Sbjct: 2   PFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEH----AFADESYFKGEPKKKKRSEDMF 57

Query: 160 ATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQYP 2
               E+  PSEQR  DQK VD+ ++  I A P+   ++ YL + F LR  Q+P
Sbjct: 58  EEAAEEKKPSEQRIADQKAVDDQILPKISAVPN---MKKYLSSLFSLRKGQFP 107


>SB_48173| Best HMM Match : WD40 (HMM E-Value=7.3e-18)
          Length = 659

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -3

Query: 189 SNAKRVMTSLPQKKRNTFHLSSAKPIRRQSMRL*SKPLEPDPTRRCSADTSRRP 28
           S AKRV   L    R+   LS+  P  + +  L  + LEP  +RRCS +  R P
Sbjct: 589 STAKRVSRKLHLIGRSLMSLSTMLPSTQPNHTL--RALEPTASRRCSYEDKRVP 640


>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -1

Query: 557 NQNSTPQ---T*EVLLPHSGENPCLIWWPSIQQACTQDPTQP 441
           NQ++ PQ   T  VL+PH G  PC+  +P+         TQP
Sbjct: 94  NQSTLPQGNATQWVLIPHKGSMPCIGTFPNAINTWIIPGTQP 135


>SB_3148| Best HMM Match : Keratin_B2 (HMM E-Value=0.26)
          Length = 147

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
 Frame = -1

Query: 503 NPCLIWWPSIQQACTQDPTQPEDRNCLHSPRW*TCRQEGCT----CWNSAQRSAFSYWTF 336
           NPC+   P+  + C Q   QP    C++S     C Q   T    C     +   +  T 
Sbjct: 14  NPCVQTAPTSTRVCKQHQHQPV---CVNSTNINPCVQTAPTSTRVCKQHQHQPVCANSTN 70

Query: 335 CIQFVPATPYSSALCDRHLHQ 273
               V   P S+ +C +H HQ
Sbjct: 71  INPCVQTAPTSTRVCKQHQHQ 91


>SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -1

Query: 449 TQPEDRNCLHSPRW*TCRQEGCTCWN-SAQRSAFSYWTFCIQFVPATPYS 303
           TQ   R   HSPR   CR   CT +N    +   S+ T C +  P   +S
Sbjct: 84  TQEAYRKNSHSPRKRQCRNRLCTSYNWIRNKETSSFVTLCHREKPVGHFS 133


>SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)
          Length = 204

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/83 (22%), Positives = 37/83 (44%)
 Frame = -3

Query: 261 ATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSMRL*SK 82
           AT+NC+  +  +   +  +A    +N +R    LP+ +R T    +    RR++ +L   
Sbjct: 96  ATNNCRRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTTAE-GATNNCRRRNEQL--- 151

Query: 81  PLEPDPTRRCSADTSRRPSDSAP 13
           P     T   + +  RR ++  P
Sbjct: 152 PKAQRTTAEGTTNNCRRHNEQLP 174


>SB_37525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 60 RRCSADTSRRPSDSAPANI 4
          R CS D S +PS S PAN+
Sbjct: 18 RLCSGDPSEKPSKSRPANL 36


>SB_28143| Best HMM Match : Neur_chan_memb (HMM E-Value=2.2)
          Length = 356

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 555 PEQYPSNVGSPSTPLRRKSVPHLVAVHSASMYAGSD 448
           P  Y ++ GSP+   +RK+ PH    HS+   A  D
Sbjct: 112 PMAYLTSTGSPNPQRKRKNDPHRTIDHSSVHRASRD 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,089,708
Number of Sequences: 59808
Number of extensions: 514258
Number of successful extensions: 1509
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1497
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)