Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b01f
(587 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33376| Best HMM Match : Peptidase_C13 (HMM E-Value=0.00035) 30 1.2
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 29 2.1
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09) 27 8.6
SB_35038| Best HMM Match : Ras (HMM E-Value=6.8e-13) 27 8.6
SB_19713| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_33376| Best HMM Match : Peptidase_C13 (HMM E-Value=0.00035)
Length = 1008
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 380 DGLALTLSNDVHGNDGRLAFGDGKDKTSPKVSWKFIALWENNKVY 514
D L L + HG DG L F D ++ TS +++ F +W+ + +
Sbjct: 127 DCLLYILFSPGHGGDGFLKFQDAEEVTSVELADAFEQMWQKQRYH 171
>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 588
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +3
Query: 93 QIPTSLTTFWRSSFTIASSLPITTVRLKRASIYTRRRRAKSSQM 224
+IPTS R SFTI +P + VR R S +T RR +S++
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRV 445
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 93 QIPTSLTTFWRSSFTIASSLPITTVRLKRASIYTRRRRAKSSQM 224
+IPTS R SFT+ +P + VR R S +T RR +S++
Sbjct: 146 RIPTSRVRQTRLSFTMVRRIPTSRVRQTRLS-FTMVRRIPTSRV 188
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 153 PITTVRLKRASIYTR-RRRAKSSQM**TN*YETTR*TAWSTPINFGSRAPRTSSVIVSQL 329
P T + R+S T RRR +++Q+ T Y+ T T+ + SR T ++ VS
Sbjct: 3951 PTTGISESRSSSVTSIRRRFENNQLEET--YKRTETTSLVMDVQERSRESTTLAIDVSPR 4008
Query: 330 SSDLSSPKTP 359
+ ++SP+TP
Sbjct: 4009 APSVTSPRTP 4018
>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = -2
Query: 448 TVAEGKSAIVAVNIITQRQSETVALVHKLNGVFGEDKSELNWETITDDVLGALEPKLIGV 269
TVA+ ++ I + + ++V + G D SE ++ T +VL ALE + + +
Sbjct: 71 TVAKTGMILLCGEITSNAVVDYQSVVRQCIKDIGYDDSEKGFDYKTCNVLVALEQQSVDI 130
Query: 268 LHAVHL 251
H VH+
Sbjct: 131 AHGVHV 136
>SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1498
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/97 (23%), Positives = 43/97 (44%)
Frame = +2
Query: 119 LEEQLYNSIVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGS 298
L L N I A +A + L++E K ++++NVV + + + + A++ W Q
Sbjct: 810 LNRLLRNEISNAQGPNAAGQKNFLFQEVK-DILSNVVQRNMVRESLQAKKDAFESWRQVI 868
Query: 299 KDIVRDCFPVEFRLIFAENAIKLMYKRDGLALTLSND 409
+ + C P + L + A+ L +D L D
Sbjct: 869 EVALATC-PGDILLQDVKQAVILETLQDLLMKIAQED 904
>SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 233 KLIRNNKMNCMEYAYQLWLQGSKDIVRDCF 322
+L NN+M +A+ WL+G + R C+
Sbjct: 17 RLHNNNRMLICTFAHSTWLKGRQGSSRQCY 46
>SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)
Length = 720
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = -3
Query: 384 PSRLYISLMAFSAKISLNSTGKQSRTMSLEPWSQS**AYSMQFILLFRISLFTTFVMTSL 205
P Y K+ + G S+ L W + A S+++ LL F T VM S
Sbjct: 209 PKHAYFRQTEGKGKMFADCYGHSSKVNEL--WKKISPASSLEYELLLCNETFITGVMISK 266
Query: 204 FFSSYK 187
F +SYK
Sbjct: 267 FHTSYK 272
>SB_35038| Best HMM Match : Ras (HMM E-Value=6.8e-13)
Length = 322
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Frame = +2
Query: 200 KKSEVITNVVNKLIRNNKMNCME------YAYQLWLQGSKDIVRD 316
KK + ++V L + NK N +E Q LQGSKDIVR+
Sbjct: 207 KKKKAAISLVESLFQENKPNPIEEECENFLKEQSGLQGSKDIVRN 251
>SB_19713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 507
Score = 27.5 bits (58), Expect = 8.6
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 149 RRCYCKAAPPEC 114
RRC+C+ APP C
Sbjct: 203 RRCFCRYAPPRC 214
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,871,555
Number of Sequences: 59808
Number of extensions: 321959
Number of successful extensions: 4107
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4107
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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