Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10a06f
(606 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 32 0.41
SB_9248| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.55
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1) 31 0.96
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10) 29 2.9
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23) 29 2.9
SB_30122| Best HMM Match : YadA (HMM E-Value=2) 28 5.1
SB_30536| Best HMM Match : fn3 (HMM E-Value=0.079) 28 5.1
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 31.9 bits (69), Expect = 0.41
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = -3
Query: 352 FSPSAVEP---ASTAPGGTSPFVENCQANMDGTSTSNWSFRTSSP 227
FSPS + P + +PG TSP++ + A G S S+ +F SSP
Sbjct: 380 FSPSWMSPTPGSPVSPGPTSPYIPSPAAASPGYSPSSPAFMPSSP 424
>SB_9248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +1
Query: 28 ATPQPTCQAHTVGSPLA*ASAASHQVPSGSVPMLTV---MRSTREELTTKVTSFRPKSFR 198
A + ++ T+G P+ A+ H+ P GS TV R +L T++ +F PK +
Sbjct: 278 AVKSVSIKSKTIGIPVVRAAIQDHECPKGSRKSETVPEFFPRKRTKLETELGAFSPKEVK 337
Query: 199 P 201
P
Sbjct: 338 P 338
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 31.1 bits (67), Expect = 0.72
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +1
Query: 28 ATPQPTCQAHTVGSPLA*ASAASHQ----VPSGSVPMLTVMRSTREELTTKVTSFRPKSF 195
A P P+ + T P A+ Q PS + P TV TREE TTK T+ K+
Sbjct: 1377 AKPSPSRKHQTTTWPQTTQEMAAVQQTTEAPSTTAPPTTVEDKTREEATTKPTTTTRKTT 1436
Query: 196 RPKT 207
P T
Sbjct: 1437 IPTT 1440
>SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)
Length = 627
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 130 TVMRSTREELTTKVTSFRPKSFRPKTRVIFLSV 228
T M +EEL++KV P+ KT+V FLSV
Sbjct: 297 TSMDHIKEELSSKVMDLAPEGLTDKTKVPFLSV 329
>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4554
Score = 30.7 bits (66), Expect = 0.96
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +3
Query: 162 HEGDIVPAKVIPTKNACYISFGGEEVLKDQFEVLVPSMFA----WQFSTNGEVPP-GAVE 326
H GD++P++V ++NA + + E + DQ + FA ST+ + P G +E
Sbjct: 4443 HHGDVIPSEVFTSENA-HEALSVSESILDQIGKFINENFAESCILALSTSDSLYPFGRIE 4501
Query: 327 AGSTA 341
AG +A
Sbjct: 4502 AGESA 4506
>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
Length = 1163
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 297 NGEVPPGAVEAGSTADGEKLYFGRVNHDGCTTPGKIHPSH 416
NG + + A S+ G + GR+N G P KIH H
Sbjct: 736 NGAIKASKISATSSQTGAQPSQGRLNGGGAWCPDKIHHVH 775
>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
Length = 1153
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 225 GGEEVLKDQFEVLVPSMFAWQF-STNGEVPPGAVEAGSTADGEKL 356
GG E + D+ V + W + G++PPG G DG +L
Sbjct: 38 GGNEGIVDELHVYNTATNQWFVPAVRGDIPPGCAAYGFICDGTRL 82
>SB_30122| Best HMM Match : YadA (HMM E-Value=2)
Length = 408
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 28 ATPQPTCQAHTVGS-PLA*ASAASHQVPSGSVPMLTVMRSTREELTTKVTSFRP 186
A PQ V S PLA ++ S+ P VP+ T+ ST E+TT P
Sbjct: 214 ALPQAAIVQDGVPSHPLAPFTSESNSRPETKVPITTIGASTSAEVTTSQRDLMP 267
>SB_30536| Best HMM Match : fn3 (HMM E-Value=0.079)
Length = 754
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +1
Query: 22 RQATPQPTCQAHTVGSPLA*ASAASHQVPSGSVPMLTVMRSTREELTTKVTSFRPKSFRP 201
R +P +C + ++ + +S S+ V S+P L + R T E VT +RP S RP
Sbjct: 686 RVPSPCRSCDSLSLHRESSFSSRFSN-VMGASLPSLRLDRETPPE--RGVTEYRPGSSRP 742
Query: 202 KTRV 213
K R+
Sbjct: 743 KKRI 746
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 5 FHLVVEDKRRHNRHARHIPLGPRLLKPAQHPTRC-PQG 115
+HL + + H+ H++ L P + P Q PT PQG
Sbjct: 2385 YHLALHQQHHHHPHSQPSLLAPLITVPGQLPTPSQPQG 2422
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,736,799
Number of Sequences: 59808
Number of extensions: 476981
Number of successful extensions: 1699
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1696
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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