Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_G21
(560 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 2e-17
SB_3235| Best HMM Match : Laminin_EGF (HMM E-Value=3.6e-13) 34 0.069
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 32 0.37
SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10) 30 1.1
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 29 2.0
SB_24005| Best HMM Match : TFIIB (HMM E-Value=0.0014) 29 2.0
SB_59706| Best HMM Match : Trypsin (HMM E-Value=0.16) 29 2.0
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 29 2.6
SB_50855| Best HMM Match : Ras (HMM E-Value=0) 29 3.4
SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_22169| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 28 6.0
SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14) 27 7.9
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 85.8 bits (203), Expect = 2e-17
Identities = 50/105 (47%), Positives = 65/105 (61%), Gaps = 18/105 (17%)
Frame = +2
Query: 278 WDVPPPGFEHITPLQYKAMQAAGQI---------PANIVADT-------PQAAVPVV--G 403
WD+PP G+E ++ ++YK M+A GQI PA ++ T P +AV + G
Sbjct: 496 WDIPPLGYEQVSAMEYKTMRANGQIAAPAIGTVIPATALSATQSGASVLPASAVASLPHG 555
Query: 404 STITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAXAAGNPV 538
S +TRQARRLYVGNIPFGVTE +EFFN +M + L A GNPV
Sbjct: 556 SQMTRQARRLYVGNIPFGVTENLMIEFFNAKMKEAKLNTAPGNPV 600
>SB_3235| Best HMM Match : Laminin_EGF (HMM E-Value=3.6e-13)
Length = 170
Score = 34.3 bits (75), Expect = 0.069
Identities = 21/77 (27%), Positives = 29/77 (37%)
Frame = +1
Query: 307 YHAITIQGDASGGSDSCQYCRRHTTSCRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVF 486
+H + + GD G C HT C A G YN C+ +T H + F
Sbjct: 94 HHRVNVSGDPFYGKCIPCNCNNHTNDCYADTGLCYN-------CKHNTAGEHCELCDDGF 146
Query: 487 QSTNASIGPGPXRRQPC 537
A PG ++ PC
Sbjct: 147 YGNAADGTPGDCKQCPC 163
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 31.9 bits (69), Expect = 0.37
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 356 ANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 493
A +A QA R R ++VGNIP+ +EE+ E F++
Sbjct: 2 ATALAXIAQAQQKQSSGAADRSLRSVFVGNIPYEASEEQLKEIFSE 47
>SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)
Length = 466
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 277 LGCTAAGIRAYHAITIQGDASGGSDSCQYCRRHTTSC 387
L + I+ YH + D S SDSC+ CR T C
Sbjct: 84 LNTVSTRIKRYH---VDVDVSSSSDSCRICRDSTAGC 117
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 428 RLYVGNIPFGVTEEETMEFF 487
R+Y+G +P+G TE++ FF
Sbjct: 4 RVYLGRLPYGTTEDDVRRFF 23
>SB_24005| Best HMM Match : TFIIB (HMM E-Value=0.0014)
Length = 751
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +2
Query: 389 VPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAXAAGNPVFGL 547
+P+ GS IT + R G+I G++ T+ NQ+M L G A VFG+
Sbjct: 123 LPLAGSLITTRQR----GSIK-GLSHLMTLTLANQRMKLQGFLIAPSTKVFGV 170
>SB_59706| Best HMM Match : Trypsin (HMM E-Value=0.16)
Length = 91
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 283 CTAAGIRAYHAITIQGDASGGSDSCQYCRRHTTSCRAGGGFD 408
C+ A R + ++ G ASGG DSCQ C G F+
Sbjct: 28 CSRAYSRLHESMVCAGRASGGIDSCQGDSGGPMVCEYNGKFN 69
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 410 ITRQARRLYVGNIPFGVTEEETMEFFNQ 493
+ R+ R L+VGN+P + EE+ ++ F +
Sbjct: 1 MVRETRHLWVGNLPENIREEDIVKHFTR 28
>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
Length = 733
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 434 YVGNIPFGVTEEETMEFFNQQMHLSG 511
++GN+P+ V E+ +EFF+ L G
Sbjct: 280 FLGNLPYDVEREDILEFFSSVKSLRG 305
>SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/52 (25%), Positives = 22/52 (42%)
Frame = +1
Query: 376 TTSCRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVFQSTNASIGPGPXRRQ 531
T + R G +N ++ C Q + HR+R + V+ G G + Q
Sbjct: 71 TVAARRSGSPIFNFKEHRLFCGQPAKYNHRKRGSDVYPIPKGHDGEGEEKYQ 122
>SB_22169| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +1
Query: 298 IRAYHAITIQGDASGGSDSCQYCRRHTTSCRAGGGFDYNTSSAK 429
I+ H ++ + + S S C CR T C++ N S+++
Sbjct: 61 IKVVHTLSARPELSHCSGVCNICRHRTQECKSDDNKSLNGSNSR 104
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 27.9 bits (59), Expect = 6.0
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +2
Query: 422 ARRLYVGNIPFGVTEEETMEFF 487
+ R+Y+G +P+G E++ +FF
Sbjct: 2 SNRVYLGRLPYGTREDDVKKFF 23
>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
Length = 273
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 416 RQARRLYVGNIPFGVTEEETMEFF 487
+Q L+VGN+PF +T E+ ++ F
Sbjct: 71 KQRYILFVGNLPFDLTTEKVLDHF 94
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 425 RRLYVGNIPFGVTEEETMEFFNQ 493
++L+VG +P TE+ ME+F Q
Sbjct: 199 KKLFVGRLPESTTEKTLMEYFAQ 221
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 27.5 bits (58), Expect = 7.9
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +2
Query: 428 RLYVGNIPFGVTEEETMEFFN 490
++++G + FG TEE+ E+F+
Sbjct: 203 KVFIGGLAFGTTEEDLKEYFS 223
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,366,489
Number of Sequences: 59808
Number of extensions: 342288
Number of successful extensions: 947
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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