Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_G18
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57840| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   7e-05
SB_33072| Best HMM Match : Arm (HMM E-Value=0.00043)                   39   0.003
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)                31   0.74 
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)              31   0.74 
SB_11124| Best HMM Match : Nuclear_move (HMM E-Value=1.54143e-44)      31   0.98 
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)                     30   1.7  
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)               29   3.0  
SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)                29   4.0  
SB_53317| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)                      28   6.9  
SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_7582| Best HMM Match : 5-nucleotidase (HMM E-Value=0)               27   9.1  
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          27   9.1  

>SB_57840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = +2

Query: 272 VEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKWNDXDDEXEXNNSYDFEQMLQ 436
           VE  + K+K    FW  L   +K+P++LKI+F++W + DD  +     + EQ  Q
Sbjct: 39  VEFSIAKQKGREFFWQRLVDSEKRPNWLKINFDRWKNEDDTEDEKQEAEEEQKRQ 93


>SB_33072| Best HMM Match : Arm (HMM E-Value=0.00043)
          Length = 701

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 22/62 (35%), Positives = 34/62 (54%)
 Frame = +2

Query: 191 NTLHEVTIALYDTVLPEKSVFVNXGXCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFN 370
           NT    T+   +T  P++ V    G  + ++LRK + D   WP L K K+K  Y+ IDF+
Sbjct: 582 NTPQVYTVQAINT--PQECVVDVKGSEILVLLRKARGDE--WPRLLKSKEKYPYISIDFD 637

Query: 371 KW 376
           +W
Sbjct: 638 RW 639


>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
          Length = 839

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 179 GAPDNTLH-EVTIALYDTVLPEKSVFVNXGXCVEMILRKEKTDGP 310
           GAPD TL  E T+AL  T+ PE +V        E  +  E T  P
Sbjct: 410 GAPDTTLAPETTVALESTMTPESTVPPETTVATETTVAPETTAAP 454


>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
          Length = 3094

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 179  GAPDNTLH-EVTIALYDTVLPEKSVFVNXGXCVEMILRKEKTDGP 310
            GAPD TL  E T+AL  T+ PE +V        E  +  E T  P
Sbjct: 2106 GAPDTTLAPETTVALESTMTPESTVPPETTVATETTVAPETTAAP 2150


>SB_11124| Best HMM Match : Nuclear_move (HMM E-Value=1.54143e-44)
          Length = 376

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
 Frame = +2

Query: 77  LWAQRKEDVFLTFSV-----ETKDPTIKIXKDSX--YFTGEGAPDNTLHEVTIA----LY 223
           +WAQ   D+ +   V     + +D  ++I   S   +  G   PD+     TI     L 
Sbjct: 90  VWAQTIHDIDIKVPVPSCVKKARDVGVEIKNSSLKVFLKGSVPPDDLKKGSTILVDGQLQ 149

Query: 224 DTVLPEKSVF-VNXGXCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNK-WNDXDDEX 397
             V  E+ ++ +  G CV + L  EKT+  FW T+ K   +    KID  +  +D D++ 
Sbjct: 150 RHVKCEECMWSLEPGKCVAINL--EKTEERFWTTVIKGDPEIDRTKIDTTRDIHDFDEQT 207

Query: 398 EXNNSYDFEQMLQNF 442
           +     D+EQ++ ++
Sbjct: 208 QT----DYEQVMYDY 218


>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
          Length = 319

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = -1

Query: 524 VNXHHQSQFPSHQTKVFXPSAQDHQLHQSSGAFARNHM-NYFXQXHHXHHSIC*NQFSGN 348
           +N HHQS   +HQ+        +H  HQSS     +H  +     HH   +I  N    +
Sbjct: 245 INHHHQSSIINHQSSSSSSIIINH--HQSSSIIINHHQSSSIINNHHQSSTIIINHHQSS 302

Query: 347 A 345
           +
Sbjct: 303 S 303


>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
          Length = 3445

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 182  APDNTLH-EVTIALYDTVLPEKSVFVNXGXCVEMILRKEKTDGP 310
            AP+ T+  E T+A   TV+PE +V +      E  +  E TD P
Sbjct: 1525 APETTVAPETTVAPETTVVPETTVALETTMAPETTVAAESTDAP 1568


>SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)
          Length = 641

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
 Frame = -1

Query: 515 HHQSQFPSHQTKVFXPSAQDHQLHQ-SSGAFARNHMNYFXQXHHXH 381
           HHQ Q   H         Q H+ HQ       R+H     Q HH H
Sbjct: 571 HHQKQQNQHHRHHQKQQNQHHRHHQKKQNQHYRHHQKQQNQHHHRH 616


>SB_53317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +2

Query: 293 EKTDGPFWPTLTKDKKKPHYLKIDFNKWNDXDDEXEXNNSYDFEQMLQ 436
           E+  G F  TL K +KK     I  NK N  DD+ + NNS  ++Q+ Q
Sbjct: 499 EERAGEF-VTLQKKRKKVQKEGIINNKNNYNDDDCKGNNSRIWQQLKQ 545


>SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)
          Length = 260

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -1

Query: 515 HHQSQFPSHQTKVFXPSAQDHQLHQSSGAFARNHMNYFXQXHHXHHSI 372
           HHQ Q+  +   V   S Q H   Q       +H   + Q H  H+SI
Sbjct: 72  HHQLQYSVYS--VSSASLQHHHQRQRHRHHQHHHQLQYIQCHQHHYSI 117


>SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +2

Query: 218 LYDTVLPEKSVFVNXGXC--VEMILRKEKTDGPFWPTLTKDKK 340
           L D+    K  F+  G    ++ I+ +EK+D  FW     D+K
Sbjct: 276 LLDSAKKSKKKFIRSGLAERLQRIINREKSDRTFWQHKLSDQK 318


>SB_7582| Best HMM Match : 5-nucleotidase (HMM E-Value=0)
          Length = 441

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -3

Query: 234 RTVSYSAIVTSCSVLSGAPSPVKYXESFXILI 139
           +++ ++ ++     L+G  SPVKY E+F I +
Sbjct: 144 KSIDHNGLMIPRMALTGGTSPVKYLEAFNITL 175


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 442 WWSWWSWA 465
           WW+WW WA
Sbjct: 246 WWTWWIWA 253


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,233,598
Number of Sequences: 59808
Number of extensions: 299402
Number of successful extensions: 823
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)