Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_G07
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34773| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   2e-07
SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.029
SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)                36   0.038
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)                32   0.35 
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)                   32   0.35 
SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055)              32   0.35 
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)              31   0.62 
SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)                31   0.62 
SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)              30   1.9  
SB_4080| Best HMM Match : zf-C3HC4 (HMM E-Value=0.23)                  30   1.9  
SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)               29   3.3  
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)                   28   5.8  

>SB_34773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 18/35 (51%), Positives = 25/35 (71%)
 Frame = +3

Query: 159 KGXKKRFEVKKWNAVXLWAWDIVVDNCAICRNHIM 263
           K  +K F +KKWNA+ +W+WD+  D CAICR  +M
Sbjct: 25  KESQKMFSLKKWNAIAMWSWDVECDTCAICRVQVM 59


>SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 482

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 336 CNHAFHFHCISRWLKTRQVCPL 401
           C H FH  CI  WL T+ +CP+
Sbjct: 230 CRHVFHRDCIDSWLATQSICPV 251


>SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
          Length = 617

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 19/56 (33%), Positives = 23/56 (41%)
 Frame = +3

Query: 237 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLH 404
           C++ R   M  C EC           CT+    C H+FH HCI  WL      P H
Sbjct: 546 CSVGRPSWMIPCGECVIC-LDEFKPGCTLLGLPCGHSFHQHCIEVWLAGDNTAPHH 600


>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
          Length = 303

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = +3

Query: 237 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPL 401
           C      I D+C+ C    A   S    + +  C H FH  CI  WL  T   CPL
Sbjct: 246 CVTVNEGIDDVCLICMEEYAVGDS----MKYLPCRHNFHSACIRTWLTYTSCKCPL 297


>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
          Length = 553

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 336 CNHAFHFHCISRWLKTRQVCPL 401
           C+H+F  +C+  WL+ R  CP+
Sbjct: 386 CSHSFCEYCLQSWLRKRNTCPI 407


>SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055)
          Length = 545

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 336 CNHAFHFHCISRWLK 380
           CNH FH  CI RWLK
Sbjct: 379 CNHDFHSKCIDRWLK 393


>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
          Length = 558

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 336 CNHAFHFHCISRWLKTRQVCPL 401
           C H FH  C+  WL +   CPL
Sbjct: 232 CRHEFHKECVDPWLLSNFTCPL 253


>SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)
          Length = 398

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 333 VCNHAFHFHCISRWLKTRQVCPL 401
           VC H +   C+SRWL+    CP+
Sbjct: 279 VCGHKYCEPCLSRWLENNTTCPI 301


>SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)
          Length = 688

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
 Frame = +3

Query: 231 DNCAICRNHIMD-----LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 395
           ++C IC+  + +      C  C             +    C H F   CIS W    Q C
Sbjct: 459 NSCPICQEELAEPIMLRTCKVCFVMPTCQVKLAKQIMLRTCKHIFCEDCISLWFDREQTC 518

Query: 396 PL 401
           P+
Sbjct: 519 PM 520


>SB_4080| Best HMM Match : zf-C3HC4 (HMM E-Value=0.23)
          Length = 203

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 276 ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 398
           EC     +  S+  +++   C H+F   C S+W++  + CP
Sbjct: 61  ECYDVNVTLMSDSFSISLQPCMHSFCASCYSQWMEHSRDCP 101


>SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 336 CNHAFHFHCISRWLKTRQVCPL 401
           C+H FH  CI  WL+    CP+
Sbjct: 80  CDHLFHPGCILPWLEKTNSCPV 101


>SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = +3

Query: 333 VCNHAFHFHCISRWLKT---RQVCPL 401
           +C H F + C+ RWL+T   R +CP+
Sbjct: 77  MCGHLFCWPCLHRWLETRPNRSMCPV 102


>SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 336 CNHAFHFHCISRWL-KTRQVCPL 401
           C+HA+H  C+  WL + ++ CP+
Sbjct: 319 CDHAYHCKCVDPWLTEGKRTCPV 341


>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
          Length = 358

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 336 CNHAFHFHCISRWLKTR 386
           C H +H  CI +WLK R
Sbjct: 311 CLHEYHTRCIDKWLKNR 327


>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
          Length = 648

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +3

Query: 231 DNCAIC-RNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHC 362
           D+   C R+H   L   C A      +E+CT A   C H  HF C
Sbjct: 126 DSKVYCGRHHAETLKPRCAACDEIIFAEQCTEAEDSCWHVQHFCC 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,713,850
Number of Sequences: 59808
Number of extensions: 377371
Number of successful extensions: 751
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)