Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_G03
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35)                  52   3e-07
SB_17048| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   6e-04
SB_15443| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_45543| Best HMM Match : PP2C (HMM E-Value=6.00036e-42)              38   0.005
SB_36243| Best HMM Match : 7tm_2 (HMM E-Value=2.2e-09)                 38   0.005
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)                   34   0.12 
SB_57481| Best HMM Match : PP2C (HMM E-Value=2.9e-32)                  29   2.5  
SB_29277| Best HMM Match : DUF983 (HMM E-Value=4)                      29   2.5  
SB_50183| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   5.7  
SB_3605| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)                   28   7.6  
SB_6282| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  
SB_1836| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)                 28   7.6  
SB_29549| Best HMM Match : Pox_A21 (HMM E-Value=5)                     28   7.6  

>SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35)
          Length = 916

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
 Frame = +3

Query: 267 GHGGAEVATYCSQNLPNYIKNTDAYKSGDYTKALEDAFLGFDATIATKEVMDILKVLAGE 446
           G    EVA Y S++LP+ ++    YK G+  +AL D FL  D +I ++E +  LK +AG+
Sbjct: 40  GGRSQEVAEYVSKHLPDVLRGDIGYKEGNTKQALIDTFLKVDESIVSEEGLKELKEIAGD 99

Query: 447 INPPGXXXXXXXXXXXXVTNLYQEAHLPLXEVLAKY-ENKL 566
            +  G               L ++A++PL E+LAK  EN L
Sbjct: 100 NDDSGDENEADL--------LTKDANIPLSELLAKLKENNL 132


>SB_17048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 23/71 (32%), Positives = 33/71 (46%)
 Frame = +3

Query: 168 GASSMQGWRVNQEDAHNTILDFDVNTSLFAVYDGHGGAEVATYCSQNLPNYIKNTDAYKS 347
           G +S+QG +   ED    +L+ D +   FAV+DGHGG   A +    L   ++       
Sbjct: 92  GFNSLQGKKFVNEDRFK-LLELDPDFYYFAVFDGHGGVSSAEFAHDKLHEIVRRMHRDGE 150

Query: 348 GDYTKALEDAF 380
            D  K L  AF
Sbjct: 151 NDLEKILVQAF 161


>SB_15443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
 Frame = +3

Query: 159 LECGASSMQGWRVNQEDAHNTILDF-----DVNTSLFAVYDGHGGAEVATYCSQNLPNYI 323
           L   + + QG R   ED  + + D      D+  +  AV+DGHGG E A +    L   I
Sbjct: 20  LRVSSEAHQGGRKCMEDFTSILFDRQHIGKDIGQAFIAVFDGHGGREAAVFARSRLWETI 79

Query: 324 KNTDAYKSGD---YTKALEDAFL 383
           K    + S D     KA+++ F+
Sbjct: 80  KKQRGFYSSDPEHVVKAIKEGFM 102


>SB_45543| Best HMM Match : PP2C (HMM E-Value=6.00036e-42)
          Length = 375

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = +3

Query: 240 NTSLFAVYDGHGGAEVATYCSQNLPNYIKNTDAYKSGDYTKALEDAFLGFDATIATKEVM 419
           N + FAV+DGHGG + AT+ + +L  ++   + +   D   AL + F   D +   + + 
Sbjct: 75  NYAYFAVFDGHGGIDAATFAATHLHCFLAQNE-HLIKDPGLALHETFQNTDCSFGARAIS 133

Query: 420 DILKVL 437
           ++  +L
Sbjct: 134 EVNYIL 139


>SB_36243| Best HMM Match : 7tm_2 (HMM E-Value=2.2e-09)
          Length = 1338

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 186 GWRVNQEDAHNTILDFDV-NTSLFAVYDGHGGAEVATYCSQNLP 314
           G R  + +  +    F+V NT L+ V+DGH GA VA + +Q LP
Sbjct: 89  GGRREEHEFEDRSFHFNVDNTCLYGVFDGHDGASVADFAAQRLP 132


>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
          Length = 905

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +3

Query: 189 WRVNQEDAHNTILDF---DVNTSLFAVYDGHGGAEVATYCSQNLPNYI--KNTDAYKSG 350
           W+   ED H T  D+   D  +  FAV+DG+ GA  A   ++  P  +  K    Y+ G
Sbjct: 550 WKTTMEDRH-TFCDYFCNDPQSGFFAVFDGYNGATAAGTSAKTFPEVLARKVESVYRPG 607


>SB_57481| Best HMM Match : PP2C (HMM E-Value=2.9e-32)
          Length = 435

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 249 LFAVYDGHGGAEVATYCSQNLPNYI 323
           LF V DGHGG   A    + LP+YI
Sbjct: 62  LFGVMDGHGGNACAHNVCKRLPDYI 86


>SB_29277| Best HMM Match : DUF983 (HMM E-Value=4)
          Length = 317

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 296 ICGNFSTSMTVIHRKKGCIDIKVQN 222
           ICGN S + T+++  + C  +KV N
Sbjct: 258 ICGNLSVASTLVNTSRACFVVKVAN 282


>SB_50183| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 717

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 266 RSWRC*SCHILFTKSTKLHKKH 331
           +++RC  CH  FTKST L K H
Sbjct: 487 KAYRCDECHSTFTKSTSL-KSH 507


>SB_3605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 296 ICGNFSTSMTVIHRKKGCIDIKVQN 222
           ICGN S + T+++  + C  +KV N
Sbjct: 428 ICGNLSVASTLVNTSRVCFVVKVAN 452


>SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)
          Length = 1655

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 255 AVYDGHGGAEVATYCSQNLPNYIKNT 332
           AVY+  G  E+  YC +  P ++++T
Sbjct: 726 AVYEDGGRREIGKYCGKRYPRFLEST 751


>SB_6282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 200

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 4/109 (3%)
 Frame = +3

Query: 84  LHSTMGAYLSEPVTEKVSSDEANDKLECGASSMQGWRVNQEDAHNTILDFDVNTSLFAVY 263
           LH     Y+SE +  + ++   ++ +  G    +  +  +   H T LDF    + + V+
Sbjct: 59  LHKDRVYYVSELIMRRATNVARDNLISLGTCLGKFTKSEKFKLHITALDFLAPYAKYKVW 118

Query: 264 DGHGGAEVATY----CSQNLPNYIKNTDAYKSGDYTKALEDAFLGFDAT 398
              G  +   Y        L    +NT  Y+ G    ++ D+ LGF AT
Sbjct: 119 VKPGAEQTFLYGNHVTKSGLGRITENTPQYQ-GVVIYSMSDSPLGFGAT 166


>SB_1836| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)
          Length = 413

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 363 LLYNLHFYKHLCFLCSLVDFVNNMWQLQHLHDRH 262
           + Y LHFY HL   C+  +    +W   H+H ++
Sbjct: 74  ITYVLHFYTHLS--CTCTNSRCKLWPRPHMHTKY 105


>SB_29549| Best HMM Match : Pox_A21 (HMM E-Value=5)
          Length = 181

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 64  YLLFNVNYIPLWVPIYLNLLLKKCPAMKRTINSNAVQAPCKDGVSI 201
           Y++ +V Y+P+   + L  L K C AM + + S  V   CK+G  +
Sbjct: 131 YMIQHVLYLPVHKNVPLAYLKKICKAMDKVMKSR-VGVCCKNGQKV 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,924,551
Number of Sequences: 59808
Number of extensions: 450360
Number of successful extensions: 899
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)