Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F24
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)                        49   4e-06
SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)            40   0.002
SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.087
SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)             33   0.15 
SB_27884| Best HMM Match : Pox_A32 (HMM E-Value=0.61)                  30   1.4  
SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)               29   4.3  
SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)                   26   5.0  
SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_3240| Best HMM Match : Sec8_exocyst (HMM E-Value=0.48)              28   5.7  
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)                      28   7.6  

>SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)
          Length = 387

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 21/62 (33%), Positives = 38/62 (61%)
 Frame = +1

Query: 310 EASKKQKLFLMSWCPDTAKVXKXMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 489
           E + + KL L+ WCPD  ++   M+ +++F  +KK   G  K ++  + SE S EA++E+
Sbjct: 323 EGADRSKLVLIFWCPDNCEIKSRMVSAATFQDVKKKCPGGAKCLEIQERSELSFEALKEE 382

Query: 490 LR 495
           L+
Sbjct: 383 LK 384


>SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 20/62 (32%), Positives = 36/62 (58%)
 Frame = +1

Query: 310 EASKKQKLFLMSWCPDTAKVXKXMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 489
           E +++ KL L+ WCPD   +   M+ +++F  + K   G  K ++  D  + S EA++EK
Sbjct: 76  EGAERSKLVLIFWCPDNCGIKNKMVSAATFKEVMKKCPGGAKCLEIQDRFDLSFEALKEK 135

Query: 490 LR 495
           L+
Sbjct: 136 LK 137


>SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)
          Length = 310

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = +1

Query: 334 FLMSWCPDTAKVXKXMLYSSSFDALKKSLVGVQKYIQATDLSE 462
           FL   C D A + K ML  S+++ LKK   G++KY +A+++ E
Sbjct: 256 FLFDRCSDEAPIKKKMLAGSTWEYLKKKFDGLKKYFEASEICE 298


>SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
 Frame = +3

Query: 72  SGVTVSDACKTTYEEIK-KDKKHRYVVFYIRDE----------KQIDVETVGERNAEYEQ 218
           SG+ + D     Y+ ++ K+K H++  F I D+          K++D  T  E  A ++Q
Sbjct: 4   SGIKIDDESLHLYQTMQGKEKSHKFATFKISDDGKMVVIDHILKRVDTHTREEDRAIFDQ 63

Query: 219 FLEDLQKGGTGECRYGLFDFEY 284
            LE L      E RY L+D  +
Sbjct: 64  MLEKL---SDSEPRYILYDLNF 82


>SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)
          Length = 151

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +1

Query: 331 LFLMSWCPDTAKVXKXMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLRAT 501
           L  +SWC D A + K M  +S+ D ++K        + A D  +   + +  K   T
Sbjct: 93  LVFISWCSDKAPIEKKMKLASTQDYVRKKFSEATTSVNANDFDDLDYDEIAAKAEKT 149



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
 Frame = +3

Query: 72  SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV-----ETVGERNAEYEQ--FLED 230
           SG+ V D      + +K  K H+Y +F I DE  + V     ++V     E ++  F + 
Sbjct: 4   SGIKVDDESLKLSQTMKSMKTHKYAIFKICDEANMVVIDQTFKSVVTNTREEDRAIFYQM 63

Query: 231 LQKGGTGECRYGLFDFEY 284
           ++K    E RY L+D ++
Sbjct: 64  VEKLSDREPRYILYDMKF 81


>SB_27884| Best HMM Match : Pox_A32 (HMM E-Value=0.61)
          Length = 1226

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/52 (34%), Positives = 21/52 (40%)
 Frame = -3

Query: 499  WRGASLRRPPETLPRGRSLGCTSELRQGTFSERRXXXXXXXSX*PWRCPGTT 344
            W G + R PP      RS+  TS L   TF ERR           W  P T+
Sbjct: 855  WGGTAERPPPRQSAPSRSMAITSLLCGSTF-ERRTTVLSMGVVSDWSIPATS 905


>SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -3

Query: 283 YSKSNRPYLHSPVP-PFCRS--SRNCSYSALRSP 191
           YS  +RPY HSPV  P+C S   R   YS +  P
Sbjct: 112 YSPVDRPYCHSPVDRPYCHSPVDRPYCYSPVDHP 145


>SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
 Frame = -1

Query: 525 CKCCLLAIGGAELLFDGLLRRFREVGRLDVLLNSDKGLFQSVERARVQHXLXNLGGVRAP 346
           C  CLL  G  + L DGL RR    G ++VLL  D G  +S +  +    +  +G   + 
Sbjct: 348 CIACLLFGGSRKRLPDGLTRR----GDINVLLLGDPGTAKS-QLLKFVEKVSPIGVYTSG 402

Query: 345 RHQEELLFLASLRRXPGT-------GACIQSQTGHICIPRY 244
           +        AS+ R P +       GA + +  G +CI  +
Sbjct: 403 KGSSAAGLTASVMRDPVSRNFVMEGGAMVLADGGVVCIDEF 443


>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2480

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = -3

Query: 493 GASLRRPPETLPRGRSLGCTSELRQGTFSERRXXXXXXXSX*PWRCPGTTTSGRAS 326
           G + R PP      R +  TS L   TF ERR           W  P T  +G AS
Sbjct: 651 GTAERLPPRQSAPSRFMAITSLLCGSTF-ERRTTVLSMGVVSDWSVPATRCAGTAS 705


>SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1690

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 400 DALKKSLVGVQKYIQATDLSEASQEAVEEKLRATDRQ*TAFTHELATK 543
           D LKK +  +QK     +L +AS E  EEK +  +   + F H++A K
Sbjct: 403 DGLKKRMEQIQK-----ELQQASSELEEEKKKTENLLSSIFPHDVANK 445


>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
          Length = 540

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = -2

Query: 332 SFCFLLASDVXLALV----RVFKVKQAISAFPGTALLQILEELFVFGVAFANRLDVDLFL 165
           S CFL  + V L L+    R F  +  +  FP     + +    +  + F +R  VD+FL
Sbjct: 441 SMCFLSRAHVDLFLIACSCRCFPSRSHVDVFPIAFSCRCVSHHVLMSMCFPSRAHVDVFL 500

Query: 164 V 162
           +
Sbjct: 501 I 501


>SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)
          Length = 686

 Score = 26.2 bits (55), Expect(2) = 5.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 483 REAPRHRSPINSIYTRARDETEPALRHSCPDDTRPRH 593
           R+AP HR+P    +     E+ PA +H+    T  R+
Sbjct: 425 RQAPGHRTPDRHTHNNHAPESYPAAQHTPEHLTNTRN 461



 Score = 20.6 bits (41), Expect(2) = 5.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 324 TEALPDVVVPGHR 362
           TE  PD   PGHR
Sbjct: 419 TEYYPDRQAPGHR 431


>SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 692

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/51 (33%), Positives = 19/51 (37%)
 Frame = +3

Query: 441 PSDRPLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCPDDTRPRH 593
           P DRP        +   P  RS   S Y   RD    A +  C D  R RH
Sbjct: 458 PRDRPRARAHDTDQPSDPCQRSADQSPYPTQRDSQPGAGKRPCSDAGRHRH 508


>SB_3240| Best HMM Match : Sec8_exocyst (HMM E-Value=0.48)
          Length = 643

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 202 TPNTNSSSRICRRAVPGNADMAC 270
           +P T  SSR C   VPG+AD  C
Sbjct: 14  SPRTGRSSRSCSIPVPGHADHHC 36


>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1569

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 26/93 (27%), Positives = 37/93 (39%)
 Frame = +1

Query: 223  SRICRRAVPGNADMACLTLNTRTSARXTSEASKKQKLFLMSWCPDTAKVXKXMLYSSSFD 402
            SR  R      A+ A +   T  S      A++ QK    S   +TA V +     +S  
Sbjct: 1222 SRATRSRKAAEAEKAEVVEVTPVSEPKPKRATRGQKASETSKKDETAVVEESKPVRASLG 1281

Query: 403  ALKKSLVGVQKYIQATDLSEASQEAVEEKLRAT 501
               K  V V + ++  D     +E VEE  RAT
Sbjct: 1282 RKGKVAVAVTETMENKDEEVVEKEPVEETKRAT 1314


>SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)
          Length = 409

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 469 QEAVEEKLRATDRQ*TAFTHEL--ATKPNPLSDTPALTTRGH 588
           +E    K+ AT+    AFTH+L    KP  +SD P +  +G+
Sbjct: 22  EETPPIKIEATNHHAKAFTHDLENLAKPLKVSDVPNVFLQGY 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,507,472
Number of Sequences: 59808
Number of extensions: 372832
Number of successful extensions: 1157
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)