Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F23
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4123| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.009
SB_32509| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26)                    28   5.7  
SB_14894| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)              27   9.9  
SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)                27   9.9  

>SB_4123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 20/48 (41%), Positives = 28/48 (58%)
 Frame = +2

Query: 449 MLLYGIKYIKIQTFEAKILLQNVISIKMFKKLXFQXKSVSAVFQEVTL 592
           +++ GI  + +  F AKI   N  S+ +F KL F   S S VF+EVTL
Sbjct: 22  IMIAGISKLHVNRFTAKIGHDNEPSLSLFNKLGFTKISESEVFKEVTL 69


>SB_32509| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 101 IVGANIILVPYKKHHVPVYHEWMKSEELQK 190
           IVG  I+++ Y+KHH   +  W+   E  K
Sbjct: 110 IVGLAIVMIEYQKHHNRHHQHWLLDHERLK 139


>SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26)
          Length = 589

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = -3

Query: 465 IP*SNINLTA-SHPXFFPLADGSAIIIX-IXXIANSLSVMNIFVSPIIAPVSSKAVLLNI 292
           +P  N +L    HP F+P+   +AIII  I    + + V+NIF+  +    SS +   + 
Sbjct: 420 LPSCNAHLNRHKHPYFYPVVVMNAIIITIIRHYLHYVVVINIFIIDMSISSSSSSSSSSS 479

Query: 291 SLSKMINVHLXSSS 250
           S S      L + S
Sbjct: 480 SSSSSTGAQLLTPS 493


>SB_14894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1052

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -3

Query: 354 MNIFVSPIIAPVSSKAVLLNISLSKMINVHLXSSSCHVFCISYSCSKFNGSEAV 193
           ++ F+S  I P +++ V+L  +    +NV+  SS         S S FN S  V
Sbjct: 542 VSAFLSEKIIPTTTRPVILVPTKKSKLNVNTSSSEVSPTVAELSSSSFNPSSRV 595


>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
          Length = 291

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = -3

Query: 414 LADGSAIIIXIXXIANSLSVMNIFVSPIIAPVSSKAVLLNISLSKMINVHLXSSSCHVFC 235
           +A GSAI+I +     +      F+SP I      AVL++++L         + SC +  
Sbjct: 186 VARGSAILIRVSYSCRTWICSTSFMSPSILVAVGSAVLIHVALYSSRTWICSTYSCRLLF 245

Query: 234 IS 229
            S
Sbjct: 246 YS 247


>SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)
          Length = 617

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = -3

Query: 414 LADGSAIIIXIXXIANSLSVMNIFVSPIIAPVSSKAVLLNISLSKMINVHLXSSSCHVFC 235
           +A GSAI+I +     +      F+SP I      AVL++++L         + SC +  
Sbjct: 124 VARGSAILIRVSYSCRTWICSTSFMSPSILVAVGSAVLIHVALYSSRTWICSTYSCRLLF 183

Query: 234 IS 229
            S
Sbjct: 184 YS 185


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,504,939
Number of Sequences: 59808
Number of extensions: 286940
Number of successful extensions: 653
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)