Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_E22
(649 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 284 5e-77
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007) 29 2.5
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 29 3.3
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 28 5.7
SB_32128| Best HMM Match : Collagen (HMM E-Value=0.31) 28 5.7
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34) 28 7.5
SB_20635| Best HMM Match : rve (HMM E-Value=0.91) 28 7.5
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_52533| Best HMM Match : rve (HMM E-Value=2) 28 7.5
SB_42712| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7) 28 7.5
SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05) 28 7.5
SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24) 28 7.5
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33) 28 7.5
SB_37212| Best HMM Match : zf-C2H2 (HMM E-Value=2e-23) 27 9.9
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 284 bits (696), Expect = 5e-77
Identities = 134/151 (88%), Positives = 140/151 (92%)
Frame = +3
Query: 195 WVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAG 374
WVPVTKLGRLV++ KI LE IYLFSLPIKEFEIIDFFLG +L DEVLKIMPVQKQTRAG
Sbjct: 8 WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAG 67
Query: 375 QRTRFXAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRXGYWGNKIGKPHT 554
QRTRF AFVAIGD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVR GYWGNKIGKPHT
Sbjct: 68 QRTRFKAFVAIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHT 127
Query: 555 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPXP 647
VPCKVTGKCGS VRLIPAPRGTGIVSAP P
Sbjct: 128 VPCKVTGKCGSTRVRLIPAPRGTGIVSAPVP 158
>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
Length = 280
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = -3
Query: 470 NGSGDFLAALHTQTNMTVVVANGNKCXETCALSGTCLFLYRHDL 339
N G LA + N+ +V NG K + C LS T L LY HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +3
Query: 504 LPVRXGYWGNKIG--KPHTVPCKVTGKCGSVTVRLIPAPRGT 623
LP GYW N G P PC V C + + P P GT
Sbjct: 3355 LPCPAGYWCNIKGLADPSISPCPVGHYCLNAIDKPTPCPNGT 3396
>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 1130
Score = 28.3 bits (60), Expect = 5.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 374 TAHTFQXICCHWRQQRSYW 430
TA + ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504
>SB_32128| Best HMM Match : Collagen (HMM E-Value=0.31)
Length = 330
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +3
Query: 519 GYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAP 641
GY G ++G P +TG G RL P ++ P
Sbjct: 112 GYTGERLGPTAHAPASITGPVGYADERLGPTAHAPASITGP 152
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +3
Query: 519 GYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAP 641
GY G ++G P +TG G RL P ++ P
Sbjct: 196 GYTGERLGPTAHAPASITGPVGYADERLGPTAHAPASITGP 236
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +3
Query: 519 GYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAP 641
GY G ++G P +TG G RL P ++ P
Sbjct: 49 GYAGKRLGPTAHAPASITGPVGYADERLGPTAHAPASITGP 89
>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
Length = 1683
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 351 VQKQTRAGQRTRFXAFVAIGDNNGHIGLGV--KCSKEVATAIRGAIILAKLSVLPVRXGY 524
+Q+ TR +RT +NN ++ LG+ C + TA+ G +L+ + ++ G
Sbjct: 1460 IQENTRTSRRTDISYRQLQANNNKNLELGIWRHCGPAILTALSG----RRLACVKIQAGP 1515
Query: 525 W 527
W
Sbjct: 1516 W 1516
>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
Length = 748
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 324 NDEVLKIMPVQKQTRAGQRTRFXAFVAIGDNNGHIGLG 437
N +LK++ + Q +A + F FVA + H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 324 NDEVLKIMPVQKQTRAGQRTRFXAFVAIGDNNGHIGLG 437
N +LK++ + Q +A + F FVA + H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 324 NDEVLKIMPVQKQTRAGQRTRFXAFVAIGDNNGHIGLG 437
N +LK++ + Q +A + F FVA + H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045
>SB_52533| Best HMM Match : rve (HMM E-Value=2)
Length = 212
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 324 NDEVLKIMPVQKQTRAGQRTRFXAFVAIGDNNGHIGLG 437
N +LK++ + Q +A + F FVA + H G G
Sbjct: 95 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132
>SB_42712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 405
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +3
Query: 519 GYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAP 641
GY G ++G P +TG G RL P ++ P
Sbjct: 162 GYAGERLGPTAHAPASITGPVGYADERLGPTAHAPASITGP 202
>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
Length = 212
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 324 NDEVLKIMPVQKQTRAGQRTRFXAFVAIGDNNGHIGLG 437
N +LK++ + Q +A + F FVA + H G G
Sbjct: 9 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46
>SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)
Length = 387
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 351 VQKQTRAGQRTRFXAFVAIGDNNGHIGLGV--KCSKEVATAIRGAIILAKLSVLPVRXGY 524
+Q+ TR +RT +NN ++ LG+ C + TA+ G +L+ + ++ G
Sbjct: 274 IQENTRTSRRTDISYRQLQANNNKNLELGIWRHCGPAILTALSG----RRLACVKIQAGP 329
Query: 525 W 527
W
Sbjct: 330 W 330
>SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24)
Length = 963
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 499 DSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPA 368
D+L+ IAP A SLL + P+++P A +AL ++ P+
Sbjct: 365 DALSLQIAPSANNALSLLKGAYDALSPMIAPSANDALSLLKAPS 408
>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
Length = 735
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 324 NDEVLKIMPVQKQTRAGQRTRFXAFVAIGDNNGHIGLG 437
N +LK++ + Q +A + F FVA + H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569
>SB_37212| Best HMM Match : zf-C2H2 (HMM E-Value=2e-23)
Length = 827
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -3
Query: 461 GDFLAALHTQTNMTVVVANGNKCXETCALSGTCLFLYRHDLKNLI 327
G+ A H T T+V+ C E C+L FL R N++
Sbjct: 300 GEIFKAEHKITKKTMVIKEETHCNEDCSLLKEVDFLRRLSHPNIV 344
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,391,035
Number of Sequences: 59808
Number of extensions: 389936
Number of successful extensions: 1017
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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