Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B24
         (927 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)             198   4e-51
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)              29   7.1  
SB_38213| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score =  198 bits (484), Expect = 4e-51
 Identities = 94/132 (71%), Positives = 113/132 (85%)
 Frame = +1

Query: 100 MXFNKQVXSSXRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 279
           M  N +V SS RK+RK HFSAPS +RR LMS+PLSKELRQK+NV+S+P+RKDDEVQV RG
Sbjct: 1   MKRNSEVSSSRRKSRKAHFSAPSSVRRKLMSAPLSKELRQKYNVRSIPVRKDDEVQVTRG 60

Query: 280 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 459
           H+K QQVGKV+QVYRKK+V++I+RIQREKANGAT  VGIHPSK  IVKLK++KDRK ILD
Sbjct: 61  HFKSQQVGKVIQVYRKKWVIHIDRIQREKANGATVSVGIHPSKVEIVKLKIDKDRKKILD 120

Query: 460 RRAKGRLAALGK 495
           R+ + +LA  GK
Sbjct: 121 RKNRSKLAEKGK 132


>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 100 MXFNKQVXSSXRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMP--IRK 252
           M  + Q+    RK+ K H   P HIR+    S + K +R+  N  + P  IRK
Sbjct: 1   MKTHSQIQKHTRKS-KTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRK 52


>SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)
          Length = 586

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 159 CSFTYKASLDVLSPV*GTKTKIQCKIHAYSQR 254
           CS   K  L+ L+ + GT  KI+ K HA+S++
Sbjct: 72  CSCKTKTELNALNELLGTDEKIEKKSHAWSEK 103


>SB_38213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 24/100 (24%), Positives = 45/100 (45%)
 Frame = +2

Query: 236 PCLFAKTMKFRLYVDTTKVNRLAK*CRCIVKSLLYTLRGFKEKRPMVQQHMSAFTLQSVS 415
           P +FA T  ++ +    ++ R+++  R IV      +   KEK  +V+  ++   L+   
Sbjct: 89  PTIFAITPTYKRFTQKAELTRVSQTFRHIVNFHWIVIEDSKEKTSLVRNFLANCGLKYTH 148

Query: 416 LSS*R*IKTAKQSSIAEQRADWLRLAKTRVNTPRKLPQPW 535
           L+    I+T K    + ++  W   AK+R    R L   W
Sbjct: 149 LN----IRTPKVMQRSRKQPRW---AKSRGLEQRNLGLSW 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,092,397
Number of Sequences: 59808
Number of extensions: 320127
Number of successful extensions: 957
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2693287426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)