Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B19
         (844 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45258| Best HMM Match : RhoGEF (HMM E-Value=2.4e-05)                33   0.29 
SB_46713| Best HMM Match : GrpE (HMM E-Value=1.7)                      31   1.2  
SB_20112| Best HMM Match : EGF (HMM E-Value=0)                         30   2.7  
SB_7999| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.7  
SB_44547| Best HMM Match : 7tm_1 (HMM E-Value=7.9e-11)                 29   3.6  
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        29   4.7  
SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)                 29   6.2  
SB_25826| Best HMM Match : Ank (HMM E-Value=6.7e-37)                   28   8.2  

>SB_45258| Best HMM Match : RhoGEF (HMM E-Value=2.4e-05)
          Length = 322

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +2

Query: 449 LVLNLGTHGFYPFPGTFRRQYNMYVEYTSIIAEPRCYPGILHVYLVDILNFLINLIWLRI 628
           LV  +  + F PF    RR YN+ +  T  I        I+ + + +I+  LIN+I++R 
Sbjct: 219 LVAAVLKYNFVPFKRLVRRSYNIVITITITIKFTNIDTIIIVINITNIIIILINIIFIRG 278

Query: 629 VV 634
           ++
Sbjct: 279 II 280


>SB_46713| Best HMM Match : GrpE (HMM E-Value=1.7)
          Length = 420

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 158 FVYTINNKTIIVGVCGELRAVLSIGNVLTMVLHVTSMCCGI-KLRTICFVIAYLHLVSCV 334
           FVYT    TII  V    R V SIG  +    H       + KL  I F++A L LVSC 
Sbjct: 93  FVYT--GTTIIRHVQNSSRDVGSIGQRIDTEAHAHGGKTSLTKLVRITFLVAALGLVSCA 150

Query: 335 LDI 343
           L I
Sbjct: 151 LQI 153


>SB_20112| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2112

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +2

Query: 296  CFVIAYLHLVSCVLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPWAVVEPLLLVLNLGTH 472
            CFV A  +  SCV  IA    T  +   G +C+V+ D+ ++ P + +     + N+G +
Sbjct: 877  CFVNACFNGGSCVDGIAEFKCTCPLGFSGSRCEVDVDECASSPCSALGTEKCINNIGAY 935


>SB_7999| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 751 EEMRLVSE--INDLHHDLYYGEAEEHSHRFRISLI*CSQIGHDNPQ 620
           E +R V E  IN     +Y   +EEH+    + L+ CS + HDNPQ
Sbjct: 11  EPVRNVDEYKINQTESLVYTYNSEEHTAD--VILLPCSSVSHDNPQ 54


>SB_44547| Best HMM Match : 7tm_1 (HMM E-Value=7.9e-11)
          Length = 332

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +2

Query: 323 VSCVLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPW 427
           + C L IA  L+TVAI T    C +NY  FS   W
Sbjct: 73  IICSLAIADLLVTVAIGTTEMLCTLNYCTFSCNWW 107


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 436 HNRPGYSAELIVINVTLEAISDNSNCQQMKRYIQDTRHQ 320
           H++ G + EL+  + T++ +       + KR I D +HQ
Sbjct: 506 HDKEGVNGELVTNSRTIQELESKLEASESKRQILDEQHQ 544


>SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/63 (23%), Positives = 26/63 (41%)
 Frame = -1

Query: 247 HCENVSN*KNCTQFTTHTHNNSFIVDCIYKSKHTKI*LAKLFIFVNF*QEVCVVRHHHTR 68
           HCE      NCT+ T ++H+ +           T I +  +  F+       ++  HH R
Sbjct: 660 HCEKCLFPSNCTRPTDNSHSGTLAAKHYKLRDTTIIVVCAILAFICIIAIAALIYRHHKR 719

Query: 67  NRF 59
            +F
Sbjct: 720 QKF 722


>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
          Length = 1258

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 265  HVLWNQITHYMFRHRLSAFGVLCLGYSVSSADSCYCH*WL 384
            H++ N   HY F   L +  ++ +G  V    SCY   W+
Sbjct: 1103 HIVLNSRKHYFFLKVLMSLNMVIVGVGVLVTISCYLAIWI 1142


>SB_25826| Best HMM Match : Ank (HMM E-Value=6.7e-37)
          Length = 1041

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
 Frame = +3

Query: 189 LWVCVVNCVQFFQLETFSQWFYTSLACAVESNYALYVSSSLICI---W--CLVSWI*RFI 353
           L V ++ C +    +  S W   SLA A  +   + + S  IC    W  C   W    I
Sbjct: 44  LLVIIIICRRRRLYKNRSNWLLLSLATADLTVGLIMIPSIFICFFCPWLRCHSDWTVNKI 103

Query: 354 C*QLLLSLMASSVTLITISSALYPG 428
              LLL +  +++ +IT+   L  G
Sbjct: 104 IYDLLLHISVTNLCIITLDRLLLKG 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,629,505
Number of Sequences: 59808
Number of extensions: 636311
Number of successful extensions: 1485
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1483
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)