Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0057
(677 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 31 0.86
SB_7580| Best HMM Match : Topoisom_bac (HMM E-Value=0) 31 0.86
SB_20006| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_27247| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_41| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_34657| Best HMM Match : TMEM9 (HMM E-Value=2.9) 29 2.6
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022) 29 2.6
SB_34485| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3) 29 3.5
SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 29 4.6
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 29 4.6
SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_43125| Best HMM Match : Mu-conotoxin (HMM E-Value=4.2) 28 6.0
SB_18740| Best HMM Match : MFS_1 (HMM E-Value=1.1e-15) 28 6.0
SB_3608| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 8.0
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 28 8.0
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_29515| Best HMM Match : TolA (HMM E-Value=0.031) 28 8.0
SB_25939| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1) 28 8.0
SB_2510| Best HMM Match : zf-C2H2 (HMM E-Value=6.1e-15) 28 8.0
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 31.1 bits (67), Expect = 0.86
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Frame = +1
Query: 181 NSKRYQYHRQMSFLL--RALQNKKPRYPRTNTSHSPK-----FPTRRNTLRPRTSSPRSK 339
+S+ ++ HR S R+ +++ PR R + S SP+ RR R R+ SP+S+
Sbjct: 271 SSRSHRKHRSHSRSRSPRSKRSRSPRKRRRSKSRSPRRYRDSSSCRRRRSRSRSRSPKSR 330
Query: 340 LRSSINRST*KPKXGHR*TGXRGQ--MQPNRHR 432
LRS +RS + + R RG+ P R R
Sbjct: 331 LRSR-SRSPYRIRYRSRSRPPRGRRSQSPRRRR 362
>SB_7580| Best HMM Match : Topoisom_bac (HMM E-Value=0)
Length = 856
Score = 31.1 bits (67), Expect = 0.86
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +1
Query: 253 YPRTNTSHSPKFPTRRNTLRPRTSSPR--SKLRSSINRST*KPKXGHR*TGXRGQMQPNR 426
YPRT T+H P+ + L+ ++ S S +R ++ + KP+ GH G + P R
Sbjct: 334 YPRTETTHYPENFDLKGALKQQSGSAMWGSHVRELLDGAMTKPRKGHD-AGDHPPITPMR 392
Query: 427 HRQEPVVG 450
E +G
Sbjct: 393 CASESELG 400
>SB_20006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 30.7 bits (66), Expect = 1.1
Identities = 9/17 (52%), Positives = 16/17 (94%)
Frame = -3
Query: 300 AASWKLRRMTRICPGIP 250
A++WK+++M+R+CPG P
Sbjct: 244 ASTWKVKKMSRLCPGRP 260
>SB_27247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +1
Query: 130 YTKTYRQGKCLPDQCAPNSKRYQYHRQMSFLLRALQNKKPRYPRTNT-SHSPKFPTRRNT 306
Y+K + + P QC KR Y+ ++ +L+ + + N + P F + RN+
Sbjct: 21 YSKDWDKENVTP-QCVLRIKRESYYNSLAVVLQRRDWENTGVTQLNRLAAHPPFASWRNS 79
Query: 307 LRPRTSSPRSKLRS 348
RT P +LRS
Sbjct: 80 EEARTDRPSQQLRS 93
>SB_41| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Frame = -2
Query: 385 DXALVFRSSGLSMTSVLILGMTSSGGACCGELET--SENDSYLSWDTSVFCSVAPSIETT 212
D A+V + G T T GACC E+ + +Y + T F T
Sbjct: 182 DAAIV--AKGCGCTGQYSQTCTQGPGACCATAESCCKASFTYKGFITKTFDETGCCPFTK 239
Query: 211 SACGTDIFCCSERTGPADTSPVCK 140
+ C T CC E T T P +
Sbjct: 240 ATCCTHNKCCKEGTFCCPTEPAVR 263
>SB_34657| Best HMM Match : TMEM9 (HMM E-Value=2.9)
Length = 404
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 196 QYHRQMSFLLRALQNKKPRYPRTNTSHSPKFPTRRNTLRPRTSSP 330
Q H M + +Q+ PR P+ N+ PTRRN S P
Sbjct: 273 QIHMDMILEQKIVQSHVPRAPKGNSHFQQTSPTRRNVGFQHASQP 317
>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
Length = 1514
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +1
Query: 214 SFLLRALQNKKPRYPRTNTSHSPKFPTRRNTLRPRTSSPRSKLRS 348
+F +RAL ++ R P ++ S P+R +T R R S+PRS+ RS
Sbjct: 1336 TFHVRALSRQQRRRPSPSSLGSLAPPSRTSTPRSR-STPRSRSRS 1379
>SB_34485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 220 LLRALQNKKPRYPRTNTSHSPKFPTRRNTLRPRTSSPRSKLRS 348
+ + LQN+ PR P F + RN+ RT P +LRS
Sbjct: 35 ITKILQNQDGDEPREQEPAHPPFASWRNSEEARTDRPSQQLRS 77
>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
Length = 1353
Score = 29.1 bits (62), Expect = 3.5
Identities = 24/99 (24%), Positives = 42/99 (42%)
Frame = +1
Query: 145 RQGKCLPDQCAPNSKRYQYHRQMSFLLRALQNKKPRYPRTNTSHSPKFPTRRNTLRPRTS 324
R+ K P Q + SK + Q Q +PR + T S + RPR S
Sbjct: 421 RKSKARPTQASRKSKASKSKDQ------GKQGARPRQASSKTKTSKPEDQDKQAARPRQS 474
Query: 325 SPRSKLRSSINRST*KPKXGHR*TGXRGQMQPNRHRQEP 441
+ +++ R S +S +P+ R T + ++ +Q+P
Sbjct: 475 ARQARPRQSSRKSKARPRQASRKT--KTSKPQDQDKQDP 511
>SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 683
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +1
Query: 250 RYPRTNTSHSPKFPTRRNTLRPRTSSPRSK 339
R PR +T H PK PTRR PR +SPR++
Sbjct: 511 RRPRKST-HRPKKPTRR----PRKNSPRTR 535
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 192 ISVPQAD-VVSIEGATEQKTEVSQDKYESFSEVSNSPQHAPP 314
IS P AD ++SI+G+T + + ES + ++ +P PP
Sbjct: 221 ISEPSADRILSIDGSTTDEPSAADSDDESSTFITRAPAAQPP 262
>SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +1
Query: 250 RYPRTNTSHSPKFPTRRNTLRPRTSSPRSK 339
R PR +T H PK PTRR PR +SPR++
Sbjct: 148 RRPRKST-HRPKKPTRR----PRKNSPRTR 172
>SB_43125| Best HMM Match : Mu-conotoxin (HMM E-Value=4.2)
Length = 107
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +1
Query: 130 YTKTYRQGKCLPDQCAPNSKRYQYHRQMS 216
Y + C PDQC N Y YH + +
Sbjct: 74 YEENGMNSSCPPDQCCANCTSYTYHGEFT 102
>SB_18740| Best HMM Match : MFS_1 (HMM E-Value=1.1e-15)
Length = 839
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +1
Query: 130 YTKTYRQGKCLPDQCAPNSKRYQYHRQMS 216
Y + C PDQC N Y YH + +
Sbjct: 74 YEENGMNSSCPPDQCCANCTSYTYHGEFT 102
>SB_3608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 277
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 165 GPVRSEQQKISVPQADVVSIEGATEQKTEVSQD 263
GPV S V DV SI+ + + KT +SQD
Sbjct: 157 GPVDSSHNSSKVKSIDVASIDVSDDIKTLISQD 189
>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 1841
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 166 DQCAPNSKRYQYHRQMSFLLRALQNKKPRYPRTNT-SHSPKFPTRRNTLRPRTSSPRSKL 342
D P + Y+ ++ +L+ + P + N + P F + RN+ RT P +L
Sbjct: 1735 DAAEPKKECESYYNSLAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQL 1794
Query: 343 RS 348
RS
Sbjct: 1795 RS 1796
>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2317
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -2
Query: 229 PSIETTSACGTDIFCCSERTGPADTSPVCKSSCTSPG*SA 110
P ++TT+ + I E T P++T+P +S ++ G +A
Sbjct: 938 PPVKTTTGTRSSIETTPETTSPSETTPTTATSMSTDGTTA 977
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +3
Query: 237 EQKTEVSQDKYESFSE---VSNSPQHAPPEDVIPKIKTEVIDKPLD 365
++KTE S++ YE E V + P IP K IDKP+D
Sbjct: 1538 KEKTEDSEEYYEDTEEIVVVKIKRKKRIPSSFIPYDKPITIDKPID 1583
>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2463
Score = 27.9 bits (59), Expect = 8.0
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Frame = +1
Query: 112 RSIRDSYTKTYRQGKCL---PDQCAPNSKRYQ-YHRQMSFLLRALQNKKPRYPRTNT-SH 276
+SI D + T K L P + + NS + Y+ ++ +L+ + P + N +
Sbjct: 2335 KSINDVHVFTVTARKILERPPPRWSSNSPYSESYYNSLAVVLQRRDWENPGVTQLNRLAA 2394
Query: 277 SPKFPTRRNTLRPRTSSPRSKLRS 348
P F + RN+ RT P +LRS
Sbjct: 2395 HPPFASWRNSEEARTDRPSQQLRS 2418
>SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)
Length = 592
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = +3
Query: 159 SAGPVRSEQQKISVPQADVVSIEGATEQKTEVS-QDKYES---FSEVSNSPQ 302
S GP RS ++ + ++ +IE A + K+E S ++K ES FSE S SP+
Sbjct: 179 SPGPTRSIDEEHA---QEITAIEDAEQAKSESSVEEKIESSEKFSEKSESPE 227
>SB_25939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = +3
Query: 108 MALYPGLVHEDLQTGEVSAGPVRSEQQKISVPQA 209
++LY GL+ +D+++ +S+G + + + S+PQA
Sbjct: 18 LSLYFGLLFQDVESNPLSSGHKNANKPQESLPQA 51
>SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1)
Length = 782
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +3
Query: 237 EQKTEVSQDKYESFSE---VSNSPQHAPPEDVIPKIKTEVIDKPLD 365
++KTE S++ YE E V + P IP K IDKP+D
Sbjct: 69 KEKTEDSEEYYEDTEEIVVVKIKRKKRIPSSFIPYDKPITIDKPID 114
>SB_2510| Best HMM Match : zf-C2H2 (HMM E-Value=6.1e-15)
Length = 230
Score = 27.9 bits (59), Expect = 8.0
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Frame = +3
Query: 135 EDLQTGEVSAGPVRSEQQKISVPQA--DVVSIE--GATEQKTEVSQDKYESFSEVSNSPQ 302
E L T G ++ Q + VP +V E G + TE++ + + +E +N P
Sbjct: 63 ETLSTFTYQEGVEQNNVQCVLVPSTFFEVKDFESEGLSTNTTEINNETLNT-AETNNGPI 121
Query: 303 HAPPEDVIPKIKTE-VIDKPLDLKTK 377
H P + K KT+ ++D +K K
Sbjct: 122 HKKPGTSLNKRKTQPIVDDKHKVKVK 147
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,602,936
Number of Sequences: 59808
Number of extensions: 380656
Number of successful extensions: 4960
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4957
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -