Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0052
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)                    30   2.4  
SB_14238| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_58424| Best HMM Match : ADAM_spacer1 (HMM E-Value=8.5e-23)          29   3.1  
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)                   29   4.2  
SB_51126| Best HMM Match : MSG (HMM E-Value=6.4)                       28   7.3  
SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07)              28   9.6  

>SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1308

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 126 LYNDVIIADYDSAVERSKLIYTDNKGELITNVVNNLIRNNKMNAWSTPTSSGCKAPR 296
           +Y  +I +   + +       TD +  L+  ++N  IR  KM+AW  P+S   K  R
Sbjct: 211 IYKKIIGSRQSAGIRLQGSRITDRRITLVREIING-IRTVKMHAWEKPSSDIVKRTR 266


>SB_14238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
 Frame = -2

Query: 330 VNSTGKQSRTMSSEP-CIQSW*AYSMRSSCC---FV------SDCLRHL**AHPCYRC 187
           VNS G  S  +SSEP C+Q++   S    CC   F+        C++H    + C +C
Sbjct: 641 VNSNGSLSNPLSSEPQCVQTYGGNSNVGKCCSLPFIFRDTVYDKCIKHTHTGNMCQQC 698


>SB_58424| Best HMM Match : ADAM_spacer1 (HMM E-Value=8.5e-23)
          Length = 487

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = +1

Query: 403 WRGCLRGQQRQDQFKSQLEIHSAVGEQQGLLQDREPERKQNLGIESPN*QKXATTWLTGS 582
           W+ C +   R    +S L + S   ++Q  L+D+E  R + L + +   +     W++G+
Sbjct: 156 WQTCSQSCDRGVSVRSVLCVRSIKNDEQVALEDKECARPRPLSVRACYKRPCPPPWVSGN 215

Query: 583 LT 588
            T
Sbjct: 216 WT 217


>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
          Length = 924

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +1

Query: 367 QARRSRFYIERQWRGCLRGQQRQDQFKSQLEIHSAVGEQQGL--LQDREPERKQNL 528
           + RR +   ERQ R      ++Q+Q + QLE+     EQQ    LQ R+ E KQ +
Sbjct: 637 ERRRQQEEAERQRREQEEVFKQQEQQRQQLELQKRQQEQQRQQELQKRQQEEKQRM 692


>SB_51126| Best HMM Match : MSG (HMM E-Value=6.4)
          Length = 194

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 386 FTLSDNGGVAYGDSKDRTSSRV-SWKFIPLWENNKVYFKIENLSANR 523
           FTL D+    YG+ K+   S+V S   + L  +NKVY   E+L+ +R
Sbjct: 101 FTLRDDRNKFYGNRKEIAGSKVSSISSLALESDNKVYIS-ESLTPSR 146


>SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07)
          Length = 659

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 189 TDNKGELITNVVNNLIRNNKMNAWSTP 269
           TD +  L++ +++  IR  KMNAW TP
Sbjct: 258 TDQRVTLVSQIISG-IRVIKMNAWETP 283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,093,763
Number of Sequences: 59808
Number of extensions: 459839
Number of successful extensions: 1205
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)