Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0051
(702 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45184| Best HMM Match : C2 (HMM E-Value=1.1e-22) 29 2.8
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 29 2.8
SB_41604| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14) 29 3.6
SB_58789| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_56989| Best HMM Match : DUF1103 (HMM E-Value=2.4) 28 6.4
SB_55600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_2219| Best HMM Match : 7tm_2 (HMM E-Value=0.81) 28 6.4
SB_1619| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_58015| Best HMM Match : rve (HMM E-Value=0.00087) 28 8.4
SB_39420| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_15820| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37) 28 8.4
SB_35172| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9) 28 8.4
>SB_45184| Best HMM Match : C2 (HMM E-Value=1.1e-22)
Length = 344
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 484 FAALVAVIWVPVASIWYAEXLIVVLWRKKPSLITILNAYWMAGFSF 621
F + A I V +W L V+ +PSL T+ YW+ +F
Sbjct: 158 FTKVCAAIMVTYILMWSPSALSQVVRSSRPSLRTLCANYWLTSLAF 203
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 484 FAALVAVIWVPVASIWYAEXLIVVLWRKKPSLITILNAYWMAGFSF 621
F + A I V +W L V+ +PSL T+ YW+ +F
Sbjct: 823 FTKVCAAIMVTYILMWSPSALSQVVRSSRPSLRTLCANYWLTSLAF 868
>SB_41604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 406
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 484 FAALVAVIWVPVASIWYAEXLIVVLWRKKPSLITILNAYWMAGFSF 621
F + A I V +W L V+ +PSL T+ YW+ +F
Sbjct: 158 FTKVCAAIMVTYILMWSPSALSQVVRSSRPSLRTLCANYWLTSLAF 203
>SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)
Length = 1931
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +1
Query: 124 LCR--YYAGCEVSTCQKYRVYXXXXXXXXXXXXSGNSQS*SDIFACLERFSLL 276
+CR YY G ++ TC KY + SG+S F+C + LL
Sbjct: 27 MCRHGYYLGTDLKTCMKYPCFAIFAPSHGFMSCSGHSTDDICSFSCETGYELL 79
>SB_58789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -2
Query: 608 AIQYAFKMVINDGFFLHNTTIXHSAYQIEATGTHI-TATNAAKKII 474
A+++A K V N FFLHN+T+ Y+I+ T +I TA + A +I+
Sbjct: 60 ALEFAVKTV-NKAFFLHNSTL---GYKIDNTCFNIPTAMSNAIEIV 101
>SB_56989| Best HMM Match : DUF1103 (HMM E-Value=2.4)
Length = 835
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Frame = -3
Query: 274 VKKNAPD-KQKYQTTIVSYRIEVIDEGFTVKRDKPCIFDMSI-----LHNLHN 134
+K+ PD KY T + + + + D+ + RD+PCI ++ + LH+LHN
Sbjct: 92 MKEYDPDLPTKYITYLDANNLWMGDQELSGWRDRPCILEVDLEYPHHLHDLHN 144
>SB_55600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 971
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Frame = -3
Query: 274 VKKNAPD-KQKYQTTIVSYRIEVIDEGFTVKRDKPCIFDMSI-----LHNLHN 134
+K+ PD KY T + + + + D+ + RD+PCI ++ + LH+LHN
Sbjct: 828 MKEYDPDLPTKYITYLDANNLWMGDQELSGWRDRPCILEVDLEYPHHLHDLHN 880
>SB_2219| Best HMM Match : 7tm_2 (HMM E-Value=0.81)
Length = 148
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = +1
Query: 430 VFAYKKDVYLRVCTLIIFFAALVAVIWVPVASIWYAEXLIVVLWRKKPSLITILNAYWMA 609
V Y D+ L++C IF ALV V+ + + +WY VV+ P+ + I+ + +M
Sbjct: 33 VRVYNADMNLKLC--YIFAWALVIVVSIYMGYLWYRVTWTVVV----PAALVIVVSIYMG 86
Query: 610 GFSFRL 627
+R+
Sbjct: 87 HLWYRV 92
>SB_1619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 667
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 702 SAHCFWSGRSQERRVIHTVEXFEHRQPKXKARHPVRV 592
+A W GR+ RR+I + F HRQ HP+R+
Sbjct: 441 AAKVVWPGRTFIRRMIDQLRCFRHRQ------HPIRI 471
>SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)
Length = 1333
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 702 SAHCFWSGRSQERRVIHTVEXFEHRQPKXKARHPVRVQN 586
+A W GR+ RR+I + F H RHP+R+ N
Sbjct: 963 AAKVVWPGRAFIRRLIDQLRCFRH------DRHPIRINN 995
>SB_39420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 993
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 104 LPEYIRHWKSDKDRHRTNKRGKPSR 30
LP Y+R K + D H ++K G SR
Sbjct: 386 LPSYLRQKKKNMDSHSSSKNGNHSR 410
>SB_15820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1998
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
Frame = -3
Query: 205 DEGFTVKRDKPCIFDMSI-----LHNLHN 134
D+G + RD+PCI ++ + LH+LHN
Sbjct: 1002 DQGLSGWRDRPCILEVDLEYPHHLHDLHN 1030
>SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37)
Length = 492
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 134 YLHNNFSRTPLPEYIRH-WKSDKDRHRTNKRGK 39
YLH +SR P PE W + K+ R K GK
Sbjct: 36 YLHKKYSRIPGPERESFIWGNAKEFQRLQKHGK 68
>SB_35172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -2
Query: 161 HVDTSQPA*YL-HNNFSRTPL-PEYIRHWKSDKDRHRTNKRGKPSRRKLCAN 12
H +PA L + TP P ++ W S++ T ++ + RRK C N
Sbjct: 17 HSSEKEPASSLVTTDLQETPTRPRFLEEWSSEETFLVTGRKKESKRRKCCQN 68
>SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)
Length = 930
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 702 SAHCFWSGRSQERRVIHTVEXFEHRQPKXKARHPVRVQN 586
+A W GR+ RR+I + F H RHP+R+ N
Sbjct: 555 AAKVVWPGRAFIRRLIDQLRCFRH------DRHPIRINN 587
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,800,937
Number of Sequences: 59808
Number of extensions: 529017
Number of successful extensions: 1558
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1558
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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