Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0049
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57005| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_57004| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_57005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 529 KTNCTRVHNAYMYRVRHRMYTMCSRIQTHNHVH 627
           +T CT+ H  Y  +  H MY+    + T  H H
Sbjct: 131 RTLCTQTHARYALKHTHTMYSNTHTLCTQTHAH 163



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 532 TNCTRVHNAYMYRVRHRMYTMCSRIQTHNHVHTYA 636
           T CT+ H  Y  +  H M++      T  H H YA
Sbjct: 155 TLCTQTHAHYALKHTHTMHSNTRTQCTQTHAHNYA 189


>SB_57004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 529 KTNCTRVHNAYMYRVRHRMYTMCSRIQTHNHVH 627
           +T CT+ H  Y ++  H M++      T  H H
Sbjct: 20  RTLCTQTHARYAFKNMHAMHSNTRTFCTQTHAH 52


>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 21/73 (28%), Positives = 29/73 (39%)
 Frame = -3

Query: 239 KRLENIXK*TRQYRVYA*LRSLPRFTSLRDSKY*RXVKRPTNALEPASKSFQCTQSYWNR 60
           KRL    K  + Y+ +  L++   FT +               +EPA  S       WNR
Sbjct: 797 KRLNGTDKANQGYKAFEKLKTNAIFTDIP--------LESNEVIEPADLSISSQGYRWNR 848

Query: 59  ELGFDAARTRRPR 21
             G   +R RRPR
Sbjct: 849 GRGRGRSRYRRPR 861


>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1202

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 336  PSTEPHKTCCSIGAHDADVNPAAA 265
            P T  HKT  ++  HD D NP+ +
Sbjct: 1074 PKTPTHKTRSAVRVHDTDNNPSVS 1097


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,147,367
Number of Sequences: 59808
Number of extensions: 378730
Number of successful extensions: 837
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)