Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0043
(461 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10683| Best HMM Match : Stathmin (HMM E-Value=0.0011) 33 0.15
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 29 2.5
SB_58439| Best HMM Match : L15 (HMM E-Value=1e-05) 27 5.7
SB_50620| Best HMM Match : Lectin_C (HMM E-Value=2.1e-14) 27 5.7
SB_46683| Best HMM Match : F5_F8_type_C (HMM E-Value=9.6e-12) 27 5.7
SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08) 27 5.7
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 27 7.6
SB_43368| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-37) 27 7.6
SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11) 27 7.6
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 27 7.6
SB_40445| Best HMM Match : rve (HMM E-Value=0.0008) 27 10.0
SB_34188| Best HMM Match : Astacin (HMM E-Value=0) 27 10.0
SB_23731| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
>SB_10683| Best HMM Match : Stathmin (HMM E-Value=0.0011)
Length = 299
Score = 32.7 bits (71), Expect = 0.15
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 305 IRSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLT 460
I EQ +E + KME +EKR++Y+ L++RL + VE+ R T
Sbjct: 189 IAQEQIEQQSKLIEEKIMQKMEMTKEKRDSYMEALKTRLHEKSLDVEQKRQT 240
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 296 PPRSWPSSEQWRPSTSFQATSP 231
PP S P+S Q+ PS+SF A P
Sbjct: 107 PPASHPNSAQYPPSSSFGANMP 128
>SB_58439| Best HMM Match : L15 (HMM E-Value=1e-05)
Length = 203
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 61 VETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEK 183
+E + +I C +K GL + + G P+PRRA P K
Sbjct: 127 IERQGGKITCAHYNKLGLRVLLKPEKFEGKPIPRRAHPPSK 167
>SB_50620| Best HMM Match : Lectin_C (HMM E-Value=2.1e-14)
Length = 620
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = +1
Query: 70 KSTEIRCQEMSKGGLAYEVI--LAEPVGV 150
K+TE++CQ +++GG+A + + E +GV
Sbjct: 202 KNTELQCQSINRGGVAKASVMYIVEDIGV 230
>SB_46683| Best HMM Match : F5_F8_type_C (HMM E-Value=9.6e-12)
Length = 495
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -3
Query: 237 VSSLQLPSASHDLFDGRSLFG*VGATGNRYAHRLREYHLVRQTALRHL 94
V LQL SA +L D R + HRLRE +LV Q +R L
Sbjct: 139 VLKLQLTSAQRELDDERLANQSQNQSFLEALHRLRENNLVLQRGIREL 186
>SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08)
Length = 1381
Score = 27.5 bits (58), Expect = 5.7
Identities = 24/82 (29%), Positives = 31/82 (37%)
Frame = +1
Query: 64 ETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIMRS*RQLKRGDVA 243
E K IRC +M+ GG E + + P+P D +E R Q RG V+
Sbjct: 1144 EEKQALIRCMQMNGGGPELETPVKKEPESPIP-MDDMSRLIAKAQEFARQ-EQASRGKVS 1201
Query: 244 WKLVDGRHCSEDGQDRGGVPHP 309
K SED G P
Sbjct: 1202 DK--SSSEESEDNDVEEGEEEP 1221
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 302 GTPPRSWPSSEQWRPSTSFQATSP 231
G PP S PSS +PS Q+T+P
Sbjct: 608 GMPPMSQPSSMHMQPSGQPQSTAP 631
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 197 STEGVFSGESARRGTGTPTGSASITSYARPP 105
+ EGV SGESA + +P S+S+ PP
Sbjct: 1180 TAEGVPSGESAMSPSASPASSSSVQVTWSPP 1210
>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 1354
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 200 SSTEGVFSGESARRGTGTPTGSASITSYARPP 105
+S + S E +RG+G+P S S+T PP
Sbjct: 34 NSAQENISPEQGKRGSGSPKESESLTGKHSPP 65
>SB_43368| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-37)
Length = 367
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -3
Query: 366 ILASRASLVATMKLFVCSLRMRDASSILAIF*AMAAI 256
++ASR+++ M + +CSL + D +L F +AAI
Sbjct: 55 VIASRSNMKTKMNILLCSLAVADTGVLLINF-PLAAI 90
>SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)
Length = 1500
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 154 VPRRADSPEKTPSVEEIMRS*RQLKRG 234
V RRA+SPEKT E+ R + ++G
Sbjct: 1119 VSRRAESPEKTKEKAELQRLRNEYEKG 1145
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +1
Query: 262 RHCSEDGQDRGGVPHPQR---ADE*LHRRHQGGSRRQDGDPRGKTRGLHQRAALPSQG 426
R S+ ++R P+ +D+ HR G RR+ PR ++R R+ P +G
Sbjct: 409 RRLSQTQENRDSKFRPESDDPSDKNQHRERSPGHRRRSQSPRRRSRSPGHRSRSPRRG 466
>SB_40445| Best HMM Match : rve (HMM E-Value=0.0008)
Length = 467
Score = 26.6 bits (56), Expect = 10.0
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Frame = +1
Query: 16 QLFRSLCRLKVEAMEVETKSTEIRCQEMSKGG--LAYEVILAEPVGVPVPRRADSPEKTP 189
+L ++ +K+ A + T++ + Q M+ G + + A P P + + P
Sbjct: 211 KLHKATDSMKLGANAINTETKPVGAQNMAGGHPRVQHATDHAPPRRQSTPAKVHAEGAAP 270
Query: 190 SVEEIMRS*RQLKRGD-VAWKLVDGRHCSEDGQDRGGVPHPQRADE*LHRRHQGGSRRQD 366
++ LK G+ A DG D GG +R E RRH G RR+
Sbjct: 271 TLSGEKSDHTALKPGEKFAQLFTDGLKPVTDPSGHGG----ERLAE---RRHNGRDRRRY 323
Query: 367 GDP 375
G P
Sbjct: 324 GQP 326
>SB_34188| Best HMM Match : Astacin (HMM E-Value=0)
Length = 844
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = -1
Query: 305 CGTPPRSWPSSEQWRPSTSFQATSPLFSCLQLLMISSTEGVFSG-ESARRGTGTPTG 138
C TP W S W+P S + C + S +E G + R G+ G
Sbjct: 368 CSTPSGGWSSWSDWKPCVSDGKKTRQRFCTVKSLSSCSEATAEGTQEETRNCGSTKG 424
>SB_23731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1133
Score = 26.6 bits (56), Expect = 10.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 128 ITSYARPPFDISWQRIS 78
+T + PPFD+ W+R S
Sbjct: 978 VTGVSAPPFDVKWKRYS 994
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,816,206
Number of Sequences: 59808
Number of extensions: 214926
Number of successful extensions: 786
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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