Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0038
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32076| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               29   3.8  
SB_6412| Best HMM Match : Extensin_2 (HMM E-Value=8.1)                 29   3.8  
SB_57158| Best HMM Match : DAN (HMM E-Value=4.8e-25)                   28   6.7  
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_3037| Best HMM Match : Homeobox (HMM E-Value=4.3e-27)               28   6.7  
SB_10873| Best HMM Match : Exo_endo_phos (HMM E-Value=0.068)           28   8.8  

>SB_32076| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 2352

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 644  RLGRNTPKPXPRCASHGHRANSTPA 718
            RL R TP+  PR  +HG    +TPA
Sbjct: 952  RLARKTPRDYPRARAHGTDQPATPA 976


>SB_6412| Best HMM Match : Extensin_2 (HMM E-Value=8.1)
          Length = 329

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 434 FTLPVWMKTKPTKEFEPFAGSPPPPKIHSSTYATLNRIYYLVNP 565
           FTLP+  +TK     +  +   PP K  + +Y  L  + YL  P
Sbjct: 5   FTLPIEYQTKSYTSLKDLSYFTPPIKYPTKSYTPLKDLTYLTPP 48



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 434 FTLPVWMKTKPTKEFEPFAGSPPPPKIHSSTYATLNRIYYLVNP 565
           FTLP+  +TK     +      PP K  + +Y  L  + YL  P
Sbjct: 65  FTLPIEYQTKSYTPLKDLTYLTPPIKYPTKSYTPLKDLTYLTPP 108


>SB_57158| Best HMM Match : DAN (HMM E-Value=4.8e-25)
          Length = 144

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 449 WMKTKPTKEFEPFAGSPPPPKIHSSTYATLNRIY 550
           W KTKP K+     G  P   +++  Y   N +Y
Sbjct: 48  WCKTKPVKQIIRIEGCEPAEIVNNFCYGQCNSLY 81


>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 456 RQNQQKNLNRSPDRRPHRR 512
           +Q ++ N+NR  D+RPH+R
Sbjct: 830 KQPEKTNINRQEDKRPHKR 848


>SB_3037| Best HMM Match : Homeobox (HMM E-Value=4.3e-27)
          Length = 308

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +2

Query: 440 LPVWMKTKPTKEFEPFAGSPPPPKIHSSTYATLNRIYYLVNPRIVK 577
           LPV    KP   + P    P PP + S  Y+T N +    NP  V+
Sbjct: 60  LPVPYYMKPDLAYSPLMDLPSPPAV-SHGYSTYNSVPASYNPYSVR 104


>SB_10873| Best HMM Match : Exo_endo_phos (HMM E-Value=0.068)
          Length = 1142

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 702 ARCPWEAHLGHGLGVFRPSLSPLTTLNARGS-GHFLRFVHKRVL 574
           A  PW A L H + + RP L+ L   + +    +F RF+   V+
Sbjct: 191 AHVPWRALLAHSIALRRPVLAVLAACHEKSPLLYFARFIESFVV 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,157,324
Number of Sequences: 59808
Number of extensions: 351928
Number of successful extensions: 907
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)