Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20106
         (611 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.060
SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)           34   0.10 
SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)                33   0.14 
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)                33   0.18 
SB_8257| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_7884| Best HMM Match : rve (HMM E-Value=2.1e-15)                    30   1.7  
SB_46661| Best HMM Match : Ferritin (HMM E-Value=0.18)                 29   2.2  
SB_37165| Best HMM Match : SH3_1 (HMM E-Value=0)                       28   5.2  
SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17)          28   5.2  
SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)           28   5.2  
SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)           28   6.9  
SB_42678| Best HMM Match : Helicase_C (HMM E-Value=1.4e-24)            28   6.9  
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.1  

>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 34.7 bits (76), Expect = 0.060
 Identities = 23/106 (21%), Positives = 51/106 (48%)
 Frame = +2

Query: 260 GFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYTVEVGHEIGALAK 439
           GFA  F+K +++ +      ++ + KRGG++    H  +K  +        G+ + A+  
Sbjct: 13  GFAAFFKKAAEEEYTHAHMFMEFLNKRGGRVKL--HHIMKPCRD-----HWGNGLMAMRD 65

Query: 440 ALDTQKQLAERIFFIHRESH*KQDLLHDAEITQYIEEEFVSXQADT 577
           AL  +K++   +  +H+ +    D   D ++  ++E  F+  Q D+
Sbjct: 66  ALYLEKEINHALLDLHQVA----DTNRDPQVQDFLESNFLGEQVDS 107



 Score = 34.3 bits (75), Expect = 0.079
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
 Frame = +2

Query: 260 GFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYTVEVGHEIGALAK 439
           GF K F K S +  E    L+K   +RGG++        + D       E G  + ++  
Sbjct: 233 GFHKYFLKASHEEREHAEKLMKFQNERGGRIVLQDIKKPEKD-------EWGCGMDSIQV 285

Query: 440 ALDTQKQLAERIFFIHR--ESH*KQDLLHDAEITQYIEEEFVSXQAD 574
           ALD +K + + +  +H+  E H       DA++T +IE  F++ Q +
Sbjct: 286 ALDLEKHVNQALLDLHKIAEKH------GDAQMTDFIEGNFLTEQVE 326


>SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)
          Length = 117

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +2

Query: 14  VCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLR 136
           V SH  LSG GC G+GR +  E++ R      +A LQ +LR
Sbjct: 56  VWSHLHLSGGGC-GKGRHLPKEKQSRGSPPISAALLQHILR 95


>SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)
          Length = 155

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +3

Query: 3   NMKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNH 155
           +MK   L++AC ++    E+D C +  D GC   + L  CS YY Q  D H
Sbjct: 49  DMKSLVLLIACFSVARATEDDFCKER-DAGC--YVDLKDCSKYY-QCDDFH 95


>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
          Length = 339

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +3

Query: 6   MKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNH 155
           MK   L++AC ++    E+D C +  D GC   + L  CS YY Q  D H
Sbjct: 1   MKSLVLLIACFSVARATEDDYCKER-DAGC--YVDLKDCSKYY-QCDDFH 46


>SB_8257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
 Frame = +2

Query: 152 PRCSERTEGISL-TVFETFLPLSPVGLLLQQLPDEREGFAKLFRKLSDDSWEKTIGLIKH 328
           PR S   +G++L +VF   + LS V   ++ LP  +    +  R  +  +  KTI    +
Sbjct: 406 PRSSRIAKGLALWSVF--IITLSTVSFCVETLPQFQHDKIEKIRHATSHAHNKTILQRVN 463

Query: 329 VTKRGGKMDFSSHTTLKGDKGSNYTVEVGH 418
           VTK    ++   + T++G+  +  T  V H
Sbjct: 464 VTKGNTTVEVLVNKTIRGESTTWSTEMVDH 493


>SB_7884| Best HMM Match : rve (HMM E-Value=2.1e-15)
          Length = 813

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 480 SSTGKVTKNRTSSTMPRSLNTSRRN 554
           SSTGK+T  RT S +  S+N  RR+
Sbjct: 141 SSTGKITSTRTDSIINESVNLPRRS 165


>SB_46661| Best HMM Match : Ferritin (HMM E-Value=0.18)
          Length = 88

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/55 (27%), Positives = 33/55 (60%)
 Frame = +2

Query: 413 GHEIGALAKALDTQKQLAERIFFIHRESH*KQDLLHDAEITQYIEEEFVSXQADT 577
           G+ + A+  AL  +K++   +  +HR++  +    +DA++  +IEE F++ Q D+
Sbjct: 8   GNGLMAMEDALALEKEILSSLQALHRKAQEE----NDAQMQDFIEETFLNEQMDS 58


>SB_37165| Best HMM Match : SH3_1 (HMM E-Value=0)
          Length = 1034

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 484 PQGKSLKTGPPPRCRDHSIHRGGIRES 564
           P+G   K  PPP  R + ++ GG+  S
Sbjct: 678 PEGPQKKAAPPPPARPNQVNLGGLARS 704


>SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17)
          Length = 237

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 290 DDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGD 385
           +DS ++ +G +K V K GG+  F  H   K D
Sbjct: 160 EDSLDQLLGEVKRVLKPGGRFYFIEHIADKSD 191


>SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)
          Length = 1844

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 438 KPWTRRSSLPRGFSSSTGKVTKNRTSSTMPRSLNTS 545
           +PW    S PR  ++S G    NRT S+  R  N S
Sbjct: 457 QPWVNPGSKPRNCTNSPGSKPGNRTGSSGSRPGNGS 492


>SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)
          Length = 280

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 5   YEGVCSHRCLSGSGCAGRGRLML 73
           +EGVC+H  +   G  G GR+ML
Sbjct: 63  HEGVCNHLSMMAPGKHGTGRVML 85


>SB_42678| Best HMM Match : Helicase_C (HMM E-Value=1.4e-24)
          Length = 1058

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
 Frame = +2

Query: 203  FLPLSPVGLLLQQL----------PDEREGFAKLFRKLSDDSWEKTIGLIKHV---TKRG 343
            F P   +GLL+Q            PD R GF + FR+L      K + LIK+V   +KRG
Sbjct: 942  FHPAEDIGLLVQTFINNMNVLPFAPDVRAGFVETFRRL---LVRKALALIKYVEARSKRG 998

Query: 344  G-KMDFSSHTTLKGDKGSNYTVEVG 415
               +++++   L+ D   N   + G
Sbjct: 999  RIALEYAAKRQLRHDLQLNTEADFG 1023


>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1940

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 219 LSASYFNNYQTNGKDSRSSSGNYRTIRGRKPLVS*STSLRG 341
           L ++  NN ++  KDS + S   + +RGRK  +S S++ +G
Sbjct: 283 LRSNSINNTESPSKDSINDSPLKQKLRGRKKTISGSSTGKG 323


>SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 873

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 274 LQEIIGRFVGENHWSHKARH*EGWEDGLLESH 369
           L  IIG F+G  + S KA+   G++DG+ +++
Sbjct: 185 LDVIIGTFIGPQNASSKAQGFLGYQDGVFQTN 216


>SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 1/155 (0%)
 Frame = +2

Query: 98  TDFKSAALQRVLRPIQGQPRCSERTEGISLTVFETFLPLSPVGLLLQQLPDEREGFAKLF 277
           T+ + + L+++LR        +E     S     + +   P  +  Q L +  E   KL 
Sbjct: 260 TEEEKSRLEQLLRDDNTDSLVNENPFDSSTLSLTSGVGFRPDEVSAQALAEIEE---KLQ 316

Query: 278 RKLSDDSWEKTI-GLIKHVTKRGGKMDFSSHTTLKGDKGSNYTVEVGHEIGALAKALDTQ 454
             +  D  E T   LI     +    + S+H+ ++GD     TV++G ++  L +  D+ 
Sbjct: 317 ALVPSDELELTSRALIYTPLSQSSDSEHSTHSKVQGDIDHIDTVDIGEKV--LREEKDS- 373

Query: 455 KQLAERIFFIHRESH*KQDLLHDAEITQYIEEEFV 559
           +++ +R+  I +E   K  LL + E    I +E +
Sbjct: 374 REMHQRLQLIEQELQ-KLKLLSEDETEDKISQELL 407


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,248,409
Number of Sequences: 59808
Number of extensions: 350166
Number of successful extensions: 970
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)