Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20098
         (563 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)                29   3.5  
SB_3027| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)                    28   6.1  
SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07)                   28   6.1  
SB_32204| Best HMM Match : wnt (HMM E-Value=8.2e-31)                   28   6.1  
SB_16144| Best HMM Match : DMAP_binding (HMM E-Value=9.6)              28   6.1  
SB_58521| Best HMM Match : Tctex-1 (HMM E-Value=0.91)                  27   8.0  
SB_29615| Best HMM Match : OstA (HMM E-Value=6.2)                      27   8.0  

>SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)
          Length = 726

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 35  KWNDLVVPEKILEVTQILYSNIQKLLPTQESRDLAEAIHSYVQKKLRNQKCDDEK 199
           +++D+ VP  ++E  +     +++   +     LAE IHS++        CDD K
Sbjct: 662 RYSDITVPSIVVEGGESRVVGLRRRSLSSNDLSLAERIHSFLGSLEAAGVCDDSK 716


>SB_3027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 274 HSAESSRLDERCNSCDQLLIDHAELL 197
           H++  S+LDE+C S  Q  I+ AEL+
Sbjct: 157 HNSPISKLDEQCASTSQESIEKAELM 182


>SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)
          Length = 924

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/86 (22%), Positives = 35/86 (40%)
 Frame = +2

Query: 284 LSTRRPTLRTSSLLQAQLKSAPSLAGEATWSFFKQLYSGDFPDILALLRAYRPRSINPLD 463
           +S R P++      + + K +PS  G    + F  L   D   + ++   Y PRS    +
Sbjct: 522 VSARDPSVEVEVKARNKAKRSPSSVGRLKTALFTSLRINDAASVKSIRDRYSPRSAQ--N 579

Query: 464 EVPSKLRAVVXNGQHSSRSTVATSPS 541
                L ++  + +  S S  + S S
Sbjct: 580 NRRQNLESISDSNEEESESARSLSSS 605


>SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07)
          Length = 1033

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 501  GNTLHVRRSPPHLPRKLALRI 563
            G  L VR+ PP L RKLA R+
Sbjct: 975  GRLLRVRKDPPPLKRKLAQRV 995


>SB_32204| Best HMM Match : wnt (HMM E-Value=8.2e-31)
          Length = 731

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = -2

Query: 253 LDERCNSCDQLLIDHAELLLIIAFLVTEFLLNVGVDCFGQISAF 122
           LD   ++CDQ+L+++    +IIA  + +  +N  VD F ++ +F
Sbjct: 299 LDFMSDTCDQILLENPNAKIIIAGDINQLNINKDVD-FVRVFSF 341


>SB_16144| Best HMM Match : DMAP_binding (HMM E-Value=9.6)
          Length = 161

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 274 HSAESSRLDERCNSCDQLLIDHAELL 197
           H++  S+LDE+C S  Q  I+ AEL+
Sbjct: 100 HNSPISKLDEQCASTSQESIEKAELM 125


>SB_58521| Best HMM Match : Tctex-1 (HMM E-Value=0.91)
          Length = 136

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 283 IINTTPDFANFFAAPSSIKVRSVSCWRGNVELL 381
           I N++ DF      P S+KVR V+ + G +EL+
Sbjct: 98  ISNSSSDFIPVRQGPVSVKVRLVTIYSGLIELV 130


>SB_29615| Best HMM Match : OstA (HMM E-Value=6.2)
          Length = 343

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 253 LDERCNSCDQLLIDHAELLLIIAFLVTEF 167
           LD   + CDQ+L+++    +IIA  ++EF
Sbjct: 48  LDFMSDKCDQILLENPNAKIIIAVNISEF 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,281,062
Number of Sequences: 59808
Number of extensions: 300761
Number of successful extensions: 1056
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)