Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20097
(372 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 31 0.23
SB_38116| Best HMM Match : APC8 (HMM E-Value=3.3) 30 0.52
SB_41722| Best HMM Match : Extensin_2 (HMM E-Value=0.35) 30 0.69
SB_12074| Best HMM Match : APC8 (HMM E-Value=0.7) 29 1.2
SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_48509| Best HMM Match : DUF352 (HMM E-Value=2.4) 28 2.8
SB_6137| Best HMM Match : NACHT (HMM E-Value=0.00017) 28 2.8
SB_33146| Best HMM Match : OPA3 (HMM E-Value=2.3) 27 3.7
SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11) 27 4.9
SB_6877| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_58461| Best HMM Match : WH2 (HMM E-Value=0.63) 27 4.9
SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_37150| Best HMM Match : 7tm_1 (HMM E-Value=0.011) 27 4.9
SB_19562| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_17585| Best HMM Match : Ribosomal_L23 (HMM E-Value=3.3) 27 6.4
SB_4113| Best HMM Match : Homeobox (HMM E-Value=1.7e-05) 27 6.4
SB_39767| Best HMM Match : CBAH (HMM E-Value=0.86) 27 6.4
SB_22411| Best HMM Match : Kinesin (HMM E-Value=6.8e-17) 27 6.4
SB_8845| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.2) 27 6.4
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_49097| Best HMM Match : F-box (HMM E-Value=1.6e-07) 26 8.5
SB_44886| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-06) 26 8.5
SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25) 26 8.5
SB_51780| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_23539| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_9998| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 31.5 bits (68), Expect = 0.23
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 41 AMRALRMEIRTXP-EVVILRSSLRHRMDDLLNFYHQLGRQKLVSQALR 181
A++ L +E +T ++++L HR + +N+ H LGRQKL+ A R
Sbjct: 317 AIKELAIEEQTGSNDIIVLNVFSLHRPVEDINYRHGLGRQKLLFHASR 364
>SB_38116| Best HMM Match : APC8 (HMM E-Value=3.3)
Length = 326
Score = 30.3 bits (65), Expect = 0.52
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = +1
Query: 82 SSNTPIQSKTSDGRSPQLLPPIGKAE 159
SSNTP SD R Q LPPIG E
Sbjct: 43 SSNTPHSKSESDLRRYQALPPIGSQE 68
>SB_41722| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
Length = 343
Score = 29.9 bits (64), Expect = 0.69
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +1
Query: 103 SKTSDGRSPQLLPPIGKAEIGFSGTPASLRSPTESKARFHAGCVPKQSIYMTG 261
+ T +P+ PP+ A G S A RSP AR + V Q+ Y +G
Sbjct: 156 NNTPPWTAPEPFPPVDSARAGSSMDKARARSPPVDSARARSPRVRHQARYHSG 208
>SB_12074| Best HMM Match : APC8 (HMM E-Value=0.7)
Length = 326
Score = 29.1 bits (62), Expect = 1.2
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = +1
Query: 82 SSNTPIQSKTSDGRSPQLLPPIGKAE 159
SSNTP SD R Q LPPIG E
Sbjct: 43 SSNTPHSKSESDLRRYQALPPIGCQE 68
>SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 959
Score = 28.7 bits (61), Expect = 1.6
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Frame = +1
Query: 4 TRTVLARDMSEGSNAGLAYGDKDXSRSS----NTPIQSKTSDGRSPQ--LLPPIGKAEIG 165
TR+V D++ ++ L D + ++SS +TP +++ D PQ + IGKA+
Sbjct: 558 TRSVSLPDLTMATSRALI-SDGEQAKSSKLLLDTPKRNQV-DAAEPQSNINKEIGKAKTT 615
Query: 166 FSGTPASLRSPTESKARFHAGCV 234
S PAS SPT + C+
Sbjct: 616 KSRQPASAISPTPKSEKDRTRCI 638
>SB_48509| Best HMM Match : DUF352 (HMM E-Value=2.4)
Length = 268
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 52 LAYGDKDXSRSSNTPIQSKTSDGRSPQLLPPIGKA 156
L + +K + S + P T+DGR LPPI A
Sbjct: 63 LDFANKQITASEDRPRTIATTDGRRESYLPPINAA 97
>SB_6137| Best HMM Match : NACHT (HMM E-Value=0.00017)
Length = 1243
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 243 VNIHDWNSV-RADKKKHSDAEEQETISHYLNRNKEYLETYILE 368
V++ DW V R +H ++QE+I Y+ N+E++ ++L+
Sbjct: 314 VDVSDWKDVIRQAIPEHYSEQDQESIIRYICDNEEHI-AFVLD 355
>SB_33146| Best HMM Match : OPA3 (HMM E-Value=2.3)
Length = 139
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 258 WNSVRADKKKHSDAEEQETISHYLNRNKE 344
W + +K K S A+ + I HY +NKE
Sbjct: 39 WVMLNYEKSKKSFAQLNDIIDHYTEKNKE 67
>SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11)
Length = 733
Score = 27.1 bits (57), Expect = 4.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 139 PPIGKAEIGFSGTPASLRSPTESKARFHAGCVPKQSIYMTGIL 267
PPI K+++G T + S AR+ C K S+Y++ I+
Sbjct: 356 PPIPKSDMGSFITCSKCTRVNSSDARYCDWCGEKPSLYLSPIV 398
>SB_6877| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 304 SSASECFFLSARTEFQSCILTALER 230
SS +E F LSA+T SC+ T L R
Sbjct: 89 SSLTEFFLLSAKTIVSSCLATLLVR 113
>SB_58461| Best HMM Match : WH2 (HMM E-Value=0.63)
Length = 592
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 244 TALERNQRGIELYSQSGTSTKPECLRNQFLPSQLVVEVE 128
T LE RG+++ + + PE N LPS VE++
Sbjct: 163 TNLENESRGLDVITTTEPQVVPEETDNNLLPSTASVEMD 201
>SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 316 IVSCSSASECFFLSARTEFQSCILTALER 230
++ SS E F LSA+T SC+ T L R
Sbjct: 53 VLETSSLIEFFLLSAKTIVSSCLATLLVR 81
>SB_37150| Best HMM Match : 7tm_1 (HMM E-Value=0.011)
Length = 211
Score = 27.1 bits (57), Expect = 4.9
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -3
Query: 361 IYVSKYSLFRFR**LIVSCSSASECFFLSARTEFQSCILTALER 230
I V Y +FR + SS E F LSA+T SC+ T L R
Sbjct: 119 ISVCYYKIFR-----ALETSSLIEFFLLSAKTIVSSCLATLLVR 157
>SB_19562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 26.6 bits (56), Expect = 6.4
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = +1
Query: 31 SEGSNAGLAYGDKDXSRSSNTPIQSKTS---DGRSPQLLPPIGKAEIGFSGTPASLRSPT 201
S+G N L+YG + + S +TP+ S + G P P G
Sbjct: 86 SQGQNYTLSYGQQTDTLSLSTPVISMATPSMQGAPPSF--PSGMPSAIADNFHLDSADTL 143
Query: 202 ESKARFHAGCVPKQS 246
+ A+F AG +P+Q+
Sbjct: 144 KQLAQFPAGLLPQQA 158
>SB_17585| Best HMM Match : Ribosomal_L23 (HMM E-Value=3.3)
Length = 193
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 258 WNSVRADKKKHSDAEEQETISHYLNRNKE 344
W + +K K S A+ + I HY NKE
Sbjct: 39 WVMLNYEKSKKSFAQLNDIIDHYTEENKE 67
>SB_4113| Best HMM Match : Homeobox (HMM E-Value=1.7e-05)
Length = 224
Score = 26.6 bits (56), Expect = 6.4
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = -1
Query: 141 W*KLRRSSIRCLRLDRSITTSGXVLISIRKARIAPFRHITCQNRPCP 1
W K R+ R D + + S ISI + H+ ++PCP
Sbjct: 99 WLKQNRAKNRAQLRDLAPSASESAAISIHTGSFSSHDHLAAADQPCP 145
>SB_39767| Best HMM Match : CBAH (HMM E-Value=0.86)
Length = 1182
Score = 26.6 bits (56), Expect = 6.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 304 SSASECFFLSARTEFQSCILTALER 230
SS E F LSA+T SC+ T L R
Sbjct: 607 SSLIEFFLLSAKTTVSSCLATLLVR 631
>SB_22411| Best HMM Match : Kinesin (HMM E-Value=6.8e-17)
Length = 505
Score = 26.6 bits (56), Expect = 6.4
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Frame = +1
Query: 61 GDKDXSRSSNTPIQSKTSDGRSPQLLPPIG----KAEIGFSGTPASLRSPTESKARFHAG 228
G R SN P SK RS PP G +++ G+ A+ RS + S AR
Sbjct: 276 GTPTQPRRSNLPQPSKNHASRSQSPAPPRGRSLKRSKSPAPGSAAAARSRSPSPARSSTS 335
Query: 229 CVPKQSIYMTGILYV 273
P S T + V
Sbjct: 336 TPPTISSVKTKLQLV 350
>SB_8845| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.2)
Length = 490
Score = 26.6 bits (56), Expect = 6.4
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -3
Query: 304 SSASECFFLSARTEFQSCILTALERNQRGIELYSQSGTSTKP 179
SS E F LSA+T SC+ T L R+ I + + T T P
Sbjct: 115 SSLIEFFLLSAKTIVSSCLATLLVRSLETIPAPTPT-TPTSP 155
>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1940
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 7 RTVLARDMSEGSNAGLAYGDKDXSRSSNTPIQSKTSDGRSP 129
+T D SE SN + DK+ SR + +S S RSP
Sbjct: 1240 KTAERDDSSEESNVVILKEDKEKSREGKSGSESDRSAERSP 1280
>SB_49097| Best HMM Match : F-box (HMM E-Value=1.6e-07)
Length = 190
Score = 26.2 bits (55), Expect = 8.5
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -1
Query: 303 LRHLNVSSCRHVQNS 259
L+HLN+ SCRH+ ++
Sbjct: 175 LKHLNLRSCRHISDA 189
>SB_44886| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-06)
Length = 406
Score = 26.2 bits (55), Expect = 8.5
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +2
Query: 95 RSSLRHRMDDLLNFYHQ---LGRQKLVSQALRLR*GPRLRVKLDSTLVAFQSSQYT*LEF 265
R R M+ LN Q L ++K V A + L+++LD+ Q +Q E
Sbjct: 193 RKCTRTAMEKELNLRQQTMDLHKRKAVESAQNAQ---DLKIRLDALQQQLQEAQDGLNEK 249
Query: 266 CTCRQEETFRCRR 304
C +EE FR +R
Sbjct: 250 TRCVEEEAFRAKR 262
>SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)
Length = 1597
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 304 SSASECFFLSARTEFQSCILTALERN 227
SS E F LSA+T SC+ T L R+
Sbjct: 576 SSLIEFFLLSAKTIVSSCLATLLVRS 601
>SB_51780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +1
Query: 121 RSPQLLPPIGKAEI---GFSGTPASLRS 195
R+P LPPIGK E G SG+ S RS
Sbjct: 585 RTPSPLPPIGKKESQREGSSGSEESARS 612
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 26.2 bits (55), Expect = 8.5
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = +1
Query: 25 DMSEGSNAGLAYGDKDXSRSSNTPIQSKTSDGRSPQLLPPIGKAEIGFSGTPASLRSP 198
D E + G D S++S +SKT DG Q+L E G P S P
Sbjct: 2444 DAEEEAKEGAVDEKSDESKTSTEAKESKTDDGN--QVLAGKENTEEGSKSLPGSADKP 2499
>SB_23539| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1041
Score = 26.2 bits (55), Expect = 8.5
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -3
Query: 319 LIVSCSSASECFFLSARTEFQSCILTALERNQRGIELYSQSGTSTKP 179
+ + SS E F LSA+T SC+ T L R +E S T T P
Sbjct: 461 IALETSSLIEFFLLSAKTIVSSCLDTLL---VRPLETTSAPTTPTSP 504
>SB_9998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 26.2 bits (55), Expect = 8.5
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Frame = -3
Query: 241 ALERNQRGIELYSQSGTSTKPECLRNQFLPSQLVVEVEEIVH-PMS*T----GSEYYYFW 77
ALER Q+ +E +Q S K + +LP+ + E H P++ + G Y
Sbjct: 2 ALEREQKYVERENQLSASLKALENKQHYLPNNAIAEKHFHAHLPVNASTTHGGKMLTYGP 61
Query: 76 XCPYLHTQGPHCSLQTYHV 20
P +H Q P HV
Sbjct: 62 TMPLVHYQQPRDQHNASHV 80
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,601,562
Number of Sequences: 59808
Number of extensions: 250502
Number of successful extensions: 897
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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