Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20088X
(386 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 118 1e-27
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 114 3e-26
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 112 8e-26
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 2e-25
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 2e-25
SB_56| Best HMM Match : Actin (HMM E-Value=0) 109 6e-25
SB_54| Best HMM Match : Actin (HMM E-Value=0) 59 1e-09
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 54 3e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 51 4e-07
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 2e-06
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 41 3e-04
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 31 0.25
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.33
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 31 0.33
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 31 0.33
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.33
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.33
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.33
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 31 0.43
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 30 0.76
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 30 0.76
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.0
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 29 1.0
SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28) 29 1.8
SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 29 1.8
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2) 29 1.8
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 29 1.8
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 29 1.8
SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 29 1.8
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3
SB_57037| Best HMM Match : RVT_1 (HMM E-Value=3.4e-15) 28 3.1
SB_36120| Best HMM Match : zf-MIZ (HMM E-Value=3.9) 28 3.1
SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0) 28 3.1
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 28 3.1
SB_15607| Best HMM Match : zf-MIZ (HMM E-Value=3.9) 28 3.1
SB_59500| Best HMM Match : RVT_1 (HMM E-Value=0.015) 28 3.1
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0) 28 3.1
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26) 27 4.0
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_46582| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_28762| Best HMM Match : RVT_1 (HMM E-Value=3.9e-23) 27 4.0
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88) 27 4.0
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 27 5.3
SB_25562| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_46483| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_43617| Best HMM Match : RVT_1 (HMM E-Value=3e-21) 27 7.1
SB_35376| Best HMM Match : RVT_1 (HMM E-Value=0) 27 7.1
SB_21844| Best HMM Match : RVT_1 (HMM E-Value=0) 27 7.1
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_19106| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_12274| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_59800| Best HMM Match : SPRY (HMM E-Value=7.8e-05) 26 9.3
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
SB_34833| Best HMM Match : E6 (HMM E-Value=7.2) 26 9.3
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
SB_9298| Best HMM Match : rve (HMM E-Value=4.8e-35) 26 9.3
SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24) 26 9.3
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 26 9.3
SB_15747| Best HMM Match : Ribosomal_L17 (HMM E-Value=2.5) 26 9.3
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 118 bits (285), Expect = 1e-27
Identities = 54/62 (87%), Positives = 58/62 (93%)
Frame = +3
Query: 87 MCDEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHR 266
MCD+DVAA+VVDNGSGMCKAGFAGD APRAVFPSIVGRPRHQGVMVGMGQKDSYVG +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 AK 272
+K
Sbjct: 61 SK 62
Score = 100 bits (240), Expect = 4e-22
Identities = 43/44 (97%), Positives = 44/44 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 114 bits (274), Expect = 3e-26
Identities = 51/62 (82%), Positives = 57/62 (91%)
Frame = +3
Query: 87 MCDEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHR 266
M D+D+AA+V+DNGSGMCKAGFAGD APRAVFPSIVGRPRHQGVMVGMGQKDSYVG +
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 AK 272
+K
Sbjct: 61 SK 62
Score = 100 bits (240), Expect = 4e-22
Identities = 43/44 (97%), Positives = 44/44 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 112 bits (270), Expect = 8e-26
Identities = 51/60 (85%), Positives = 56/60 (93%)
Frame = +3
Query: 93 DEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
D+DVAA+V+DNGSGMCKAGFAGD APRAVFPSIVGRPRHQGVMVGMGQKDSYVG ++K
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 70.1 bits (164), Expect = 6e-13
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 358
+EAQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 111 bits (267), Expect = 2e-25
Identities = 51/62 (82%), Positives = 57/62 (91%)
Frame = +3
Query: 87 MCDEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHR 266
M D+++AA+VVDNGSGMCKAGFAGD APRAVFPSIVGRPRHQGVMVGMGQKDSYVG +
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 AK 272
+K
Sbjct: 61 SK 62
Score = 100 bits (240), Expect = 4e-22
Identities = 43/44 (97%), Positives = 44/44 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 111 bits (267), Expect = 2e-25
Identities = 51/60 (85%), Positives = 56/60 (93%)
Frame = +3
Query: 93 DEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
++DVAA+VVDNGSGMCKAGFAGD APRAVFPSIVGRPRHQGVMVGMGQKDSYVG ++K
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 100 bits (240), Expect = 4e-22
Identities = 43/44 (97%), Positives = 44/44 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 99
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 109 bits (263), Expect = 6e-25
Identities = 50/60 (83%), Positives = 56/60 (93%)
Frame = +3
Query: 93 DEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
+++VAA+VVDNGSGMCKAGFAGD APRAVFPSIVGRPRHQGVMVGMGQKDSYVG ++K
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 100 bits (240), Expect = 4e-22
Identities = 43/44 (97%), Positives = 44/44 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 99
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 59.3 bits (137), Expect = 1e-09
Identities = 24/34 (70%), Positives = 29/34 (85%)
Frame = +3
Query: 111 VVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQ 212
VV+DNGSG CKAG + D +PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 54.4 bits (125), Expect = 3e-08
Identities = 24/34 (70%), Positives = 27/34 (79%)
Frame = +3
Query: 111 VVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQ 212
+V+D GS M K GFAGD AP+ VFP IVGRPRHQ
Sbjct: 1359 LVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 50.8 bits (116), Expect = 4e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +3
Query: 81 FKMCDEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVG 227
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 48.8 bits (111), Expect = 2e-06
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +2
Query: 209 SGRDGRYGTEGLLCRNEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 358
S + G + L+ +EA R +L + YP+++GIV NWDDM+ +W +TF
Sbjct: 44 SQKVGDIEVKDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTF 93
Score = 43.2 bits (97), Expect = 8e-05
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +3
Query: 105 AAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRP 203
+ +V DNG+G K G+AG P +FPS+VGRP
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRP 39
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 41.1 bits (92), Expect = 3e-04
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EA K T K+PI H IV +WD ME+ W + LR PE
Sbjct: 288 DEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPE 330
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 38.7 bits (86), Expect = 0.002
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = -1
Query: 209 MAGPSHDRGEHGARSNISCETGLAHTGAIV 120
MA + D GE+G+ S +S ETGLAHTGAI+
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAII 30
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 31.5 bits (68), Expect = 0.25
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGLAHT 132
V+LSH + H M D +HG RS SCET L T
Sbjct: 224 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 31.1 bits (67), Expect = 0.33
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGLAHT 132
V+LSH + H M D +HG RS SCET L T
Sbjct: 419 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 31.1 bits (67), Expect = 0.33
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGLAHT 132
V+LSH + H M D +HG RS SCET L T
Sbjct: 282 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 31.1 bits (67), Expect = 0.33
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGLAHT 132
V+LSH + H M D +HG RS SCET L T
Sbjct: 260 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 31.1 bits (67), Expect = 0.33
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGLAHT 132
V+LSH + H M D +HG RS SCET L T
Sbjct: 102 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 31.1 bits (67), Expect = 0.33
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGLAHT 132
V+LSH + H M D +HG RS SCET L T
Sbjct: 102 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 31.1 bits (67), Expect = 0.33
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGLAHT 132
V+LSH + H M D +HG RS SCET L T
Sbjct: 136 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 30.7 bits (66), Expect = 0.43
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGLAHT 132
++LSH + H M D +HG RS SCET L T
Sbjct: 184 IVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 29.9 bits (64), Expect = 0.76
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 179 VPLDRGKAPPSGRDGRYGTEGLLCRNEAQSKRGILTLKYPIEHGIVTNW--DDMEKIWHH 352
V L + +GR+ G+ +CR +A ++TL + I G+ + D EK+W+H
Sbjct: 441 VTLSQNVVSVTGREESGGSGTQVCRKKAP----LITLSHVIRMGLALSLVSDVKEKVWYH 496
Query: 353 TFYN 364
T N
Sbjct: 497 TCPN 500
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 29.9 bits (64), Expect = 0.76
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 296 PIEHGIVTNWDDMEKIWHHTFYNE 367
P + G + NWD ++IW +TF E
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 29.5 bits (63), Expect = 1.0
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 184 GNTARGATSPAKPALHIPEP 125
GNT R PAKPAL++P P
Sbjct: 80 GNTNRRTRIPAKPALNLPSP 99
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 29.5 bits (63), Expect = 1.0
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 184 GNTARGATSPAKPALHIPEP 125
GNT R PAKPAL++P P
Sbjct: 80 GNTNRRTRIPAKPALNLPSP 99
>SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 318 VTIPCSMGYLRVRIPLLLCASFLHKSPSVP 229
V PC M LRVR+ C S LH + P
Sbjct: 60 VACPCCMSLLRVRVVCPCCMSVLHVRVACP 89
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 336 SMSSQLVTIPCSMGYLRVRIPLLLCASFLHKSPSVP 229
S+ V PC M L VR+ C S LH + P
Sbjct: 2 SLLRDRVVCPCCMSVLCVRVACPCCVSVLHVRVACP 37
>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
Length = 419
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGLA---HTGAIVYYHRGNI 99
++LSH + H L A +HG R +SCET L H A H G +
Sbjct: 253 IVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLTFHDWATTLNHHGQV 302
>SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGLA---HTGAIVYYHRGNI 99
++LSH + H L A +HG R +SCET L H A H G +
Sbjct: 114 IVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLTFHDWATTLNHHGQV 163
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGLA---HTGAIVYYHRGNI 99
++LSH + H L A +HG R +SCET L H A H G +
Sbjct: 1652 IVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLTFHDWATTLNHHGQV 1701
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGLA---HTGAIVYYHRGNI 99
++LSH + H L A +HG R +SCET L H A H G +
Sbjct: 680 IVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLTFHDWATTLNHHGQV 729
>SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)
Length = 329
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGLA---HTGAIVYYHRGNI 99
++LSH + H L A +HG R +SCET L H A H G +
Sbjct: 235 IVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLTFHDWATTLNHHGQV 284
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGLA---HTGAIVYYHRGNI 99
++LSH + H L A +HG R +SCET L H A H G +
Sbjct: 1090 IVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLTFHDWATTLNHHGQV 1139
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGLA---HTGAIVYYHRGNI 99
++LSH + H L A +HG R +SCET L H A H G +
Sbjct: 33 IVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLTFHDWATTLNHHGQV 82
>SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGLA---HTGAIVYYHRGNI 99
++LSH + H L A +HG R +SCET L H A H G +
Sbjct: 114 IVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLTFHDWATTLNHHGQV 163
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 28.3 bits (60), Expect = 2.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 184 GNTARGATSPAKPALHIPEP 125
GNT R PAKP+L++P P
Sbjct: 540 GNTNRRTRIPAKPSLNLPSP 559
>SB_57037| Best HMM Match : RVT_1 (HMM E-Value=3.4e-15)
Length = 291
Score = 27.9 bits (59), Expect = 3.1
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGL---AHTGAIVYYHRGNIFVAHLE 81
V+LSH + H L A +HG R+ SCET L H A + G + V L+
Sbjct: 4 VVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHGQVDVLLLD 59
>SB_36120| Best HMM Match : zf-MIZ (HMM E-Value=3.9)
Length = 209
Score = 27.9 bits (59), Expect = 3.1
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGL---AHTGAIVYYHRGNIFVAHLE 81
V+LSH + H L A +HG R+ SCET L H A + G + V L+
Sbjct: 104 VVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHGQVDVLLLD 159
>SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 522
Score = 27.9 bits (59), Expect = 3.1
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGL---AHTGAIVYYHRGNIFVAHLE 81
V+LSH + H L A +HG R+ SCET L H A + G + V L+
Sbjct: 104 VVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHGQVDVLLLD 159
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 27.9 bits (59), Expect = 3.1
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGL---AHTGAIVYYHRGNIFVAHLE 81
V+LSH + H L A +HG R+ SCET L H A + G + V L+
Sbjct: 474 VVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHGQVDVLLLD 529
>SB_15607| Best HMM Match : zf-MIZ (HMM E-Value=3.9)
Length = 221
Score = 27.9 bits (59), Expect = 3.1
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGL---AHTGAIVYYHRGNIFVAHLE 81
V+LSH + H L A +HG R+ SCET L H A + G + V L+
Sbjct: 137 VVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHGQVDVLLLD 192
>SB_59500| Best HMM Match : RVT_1 (HMM E-Value=0.015)
Length = 224
Score = 27.9 bits (59), Expect = 3.1
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGL---AHTGAIVYYHRGNIFVAHLE 81
V+LSH + H L A +HG R+ SCET L H A + G + V L+
Sbjct: 54 VVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHGQVDVLLLD 109
>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1676
Score = 27.9 bits (59), Expect = 3.1
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGL---AHTGAIVYYHRGNIFVAHLE 81
V+LSH + H L A +HG R+ SCET L H A + G + V L+
Sbjct: 726 VVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHGQVDVLLLD 781
>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1077
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 84 KMCDEDVAAVVVDNG-SGMCKAGFAGD 161
++CD+D + +N MCKAG+ GD
Sbjct: 487 RLCDKDAVCRLENNAIKCMCKAGYTGD 513
>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1176
Score = 27.9 bits (59), Expect = 3.1
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGL---AHTGAIVYYHRGNIFVAHLE 81
V+LSH + H L A +HG R+ SCET L H A + G + V L+
Sbjct: 810 VVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHGQVDVLLLD 865
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 212 GRDGRYGTEGLLCRNEAQSKRGIL-TLKYPIEHGIVTNWDDMEKIWHHTF 358
GR G + GL N+ S I L+ P + +VT+++ E++ H F
Sbjct: 105 GRKGEPDSGGLAVGNDIGSVEMIRWALRTPFDRDVVTHYECQEQVLDHAF 154
>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
Length = 687
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 255 FLHKSPSVPYRPSRPDGGAFPRSRGTRREEQ 163
++++ PS RP P+G P G REE+
Sbjct: 234 YMNRGPSFANRPPGPEGYRRPSHEGASREER 264
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 184 GNTARGATSPAKPALHIPEP 125
GNT R PAKP L IP P
Sbjct: 68 GNTNRRTRIPAKPTLTIPSP 87
>SB_46582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = -3
Query: 159 LLRNRPCTYRSHCLLPPRQ----HLRRTS 85
+LRNRP T+R LP Q HLR+T+
Sbjct: 58 ILRNRPITFRLQVCLPSLQTAFNHLRKTT 86
>SB_28762| Best HMM Match : RVT_1 (HMM E-Value=3.9e-23)
Length = 409
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGL 141
++LSH + H L A +HG RS SCET L
Sbjct: 4 IVLSHLNKH-LSAFNILSEMQHGFRSGFSCETQL 36
>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
Length = 379
Score = 27.5 bits (58), Expect = 4.0
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 330 SSQLVTI--PCSMGYLRV-RIPLLLCASFLHKSPSVPYRP 220
S LV++ P S Y + RIP LC L PS PY+P
Sbjct: 260 SPSLVSLQAPLSYSYKPLPRIPSSLCLLSLQAPPSYPYKP 299
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 27.1 bits (57), Expect = 5.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 192 RSRGTRREEQHLLRNRPCTYRSHCLLPPRQHLRRTS 85
RSR + R + R+ YRS P R+H R TS
Sbjct: 324 RSRSSERRRRSRSRSTEHRYRSRSRSPRRKHRRSTS 359
>SB_25562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 27.1 bits (57), Expect = 5.3
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 182 PLDRGKAPPSGRDGRYGTEGLLCRNEAQSKRGILTL 289
PL R A GRDG + + RNEA+ KR I L
Sbjct: 523 PLGRVTAVCEGRDGYVRSVTVKTRNEAELKRPIAKL 558
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 27.1 bits (57), Expect = 5.3
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -1
Query: 275 LFCSVPHSYIRVLLSHTDHHALMAGPSHDRGEHGARSNISCETGLAHT 132
L C + ++LSH + H L +HG R +SCET L T
Sbjct: 854 LTCLCCKTMEHIVLSHLNKH-LSRFNILSNAQHGFRQGLSCETQLVLT 900
>SB_46483| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGL 141
++LSH + H D +HG RS SCET L
Sbjct: 140 IVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 172
>SB_43617| Best HMM Match : RVT_1 (HMM E-Value=3e-21)
Length = 314
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGL 141
++LSH + H D +HG RS SCET L
Sbjct: 4 IVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 36
>SB_35376| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 931
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGL 141
++LSH + H D +HG RS SCET L
Sbjct: 481 IVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 513
>SB_21844| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 411
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGL 141
++LSH + H D +HG RS SCET L
Sbjct: 89 IVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 121
>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2529
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGL 141
++LSH + H D +HG RS SCET L
Sbjct: 1207 IVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 1239
>SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2124
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGL 141
++LSH + H D +HG RS SCET L
Sbjct: 1871 IVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 1903
>SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 788
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGL 141
++LSH + H D +HG RS SCET L
Sbjct: 191 IVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 223
>SB_19106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGL 141
++LSH + H D +HG RS SCET L
Sbjct: 81 IVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 113
>SB_12274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGL 141
++LSH + H D +HG RS SCET L
Sbjct: 159 IVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 191
>SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 888
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 242 VLLSHTDHHALMAGPSHDRGEHGARSNISCETGL 141
++LSH + H D +HG RS SCET L
Sbjct: 220 IVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 252
>SB_59800| Best HMM Match : SPRY (HMM E-Value=7.8e-05)
Length = 1444
Score = 26.2 bits (55), Expect = 9.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 249 HKSPSVPYRPSRPDGGAFPRSRGTRREEQHLLR 151
H S Y+ PD A+ R + T+R Q LLR
Sbjct: 25 HYSVKTGYKRITPDKAAYTRIKPTKRVTQALLR 57
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 26.2 bits (55), Expect = 9.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 179 VPLDRGKAPPSGRDGRYGTEGLLCRNEAQSKRG 277
+P G+A P G G G G++ N A K+G
Sbjct: 93 LPGPLGEAGPPGSQGSPGAPGIIGMNGAMGKKG 125
>SB_34833| Best HMM Match : E6 (HMM E-Value=7.2)
Length = 135
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 159 LLRNRPCTYRSHCLLP 112
L R R C YRSH LLP
Sbjct: 52 LFRGRYCQYRSHNLLP 67
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 184 GNTARGATSPAKPALHIPEP 125
GNT R AKPAL++P P
Sbjct: 40 GNTNRRTRIQAKPALNLPSP 59
>SB_9298| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1514
Score = 26.2 bits (55), Expect = 9.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 291 LRVRIPLLLCASFLHKSPSVPYRPSRPDGGAFPR 190
L+ R+ L LC + + +S V Y GG F R
Sbjct: 1128 LKTRLDLWLCGTIIQQSGPVSYVVKLSSGGVFRR 1161
>SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24)
Length = 270
Score = 26.2 bits (55), Expect = 9.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 179 VPLDRGKAPPSGRDGRYGTEGLLCRNEAQSKRG 277
+P G+A P G G G G++ N A K+G
Sbjct: 93 LPGPLGEAGPPGSQGSPGAPGIIGMNGAMGKKG 125
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 252 LHKSPSVPYRPSRPDGGAFPRSRGTRREEQ 163
+++ PS RP P+G P G REE+
Sbjct: 1 MNRGPSFANRPPGPEGYRRPSHEGASREER 30
>SB_15747| Best HMM Match : Ribosomal_L17 (HMM E-Value=2.5)
Length = 167
Score = 26.2 bits (55), Expect = 9.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 249 HKSPSVPYRPSRPDGGAFPRSRGTRREEQHLLR 151
H S Y+ PD A+ R + T+R Q LLR
Sbjct: 15 HYSVKTGYKRITPDKAAYTRIKPTKRVTQALLR 47
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,541,350
Number of Sequences: 59808
Number of extensions: 308740
Number of successful extensions: 904
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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