Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20058
(703 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55238| Best HMM Match : Serpin (HMM E-Value=0) 51 8e-07
SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 49 4e-06
SB_55237| Best HMM Match : Serpin (HMM E-Value=0) 45 7e-05
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2) 29 2.8
SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41) 29 3.6
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08) 29 4.8
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20) 28 8.4
SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_30045| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
Length = 345
Score = 51.2 bits (117), Expect = 8e-07
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +2
Query: 509 DLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDYK 688
DL+ P + T LVNAIYFKG W F + + +F + ++V MM+++ +K
Sbjct: 110 DLIAPGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTTSSNEVEVEMMFQKSKFK 169
Query: 689 Y 691
Y
Sbjct: 170 Y 170
Score = 37.1 bits (82), Expect = 0.014
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 330 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEENTNNRI 506
E+ +AN +++ + + F + + +++D+ +D+ + A K +N WVEE T +I
Sbjct: 49 EMSIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKI 108
>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
Length = 380
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/89 (25%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Frame = +3
Query: 246 ESYGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDV 425
+++ FP D + ++ + + G ++ MAN+++ G ++ E F S++ F++++
Sbjct: 58 KTFHFPTDVPEKFHDFLQALNASNSDGNQILMANRLFAQMGFEILEEFKKASKESFSAEM 117
Query: 426 QNIDFSKNTVAAK-SINDWVEENTNNRIK 509
+D+ KN+ A+ ++N WVE+ T ++IK
Sbjct: 118 ALVDYVKNSNGARDTVNRWVEQKTKDKIK 146
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +2
Query: 509 DLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDYK 688
+L+ + T LVNA+YFKG+W F+ T F + + I+V MY+ +++
Sbjct: 147 NLIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKFKTTPSQEIQVQFMYQSSEFR 206
Query: 689 YGESA 703
Y ES+
Sbjct: 207 YLESS 211
>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
Length = 363
Score = 44.8 bits (101), Expect = 7e-05
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +3
Query: 330 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEENTNNRI 506
E+++ NK++ HD ++ E F +R+ ++S++ +DF +K A K +N WV + T I
Sbjct: 54 EIQLVNKIWGHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNI 113
Query: 507 K 509
K
Sbjct: 114 K 114
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +2
Query: 509 DLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYV--SKDKTIKVPMMYKR 676
+L+ ++S T ++VNA+YFKG W +F E T F+V S + I+V MM ++
Sbjct: 115 ELIPHGVINSLTRLIIVNAVYFKGVWKKEFGEENTFHAAFFVPESHESKIEVEMMTRK 172
>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
Length = 641
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/86 (24%), Positives = 42/86 (48%)
Frame = +3
Query: 240 AFESYGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNS 419
AF + F DD + E S+++D +++ K + K +E+ + S +F+
Sbjct: 420 AFPRFYFLSDDEL-LEILSQTKDPTAVQPHLRKCFENIAKL---KFEEDLRISS--MFSG 473
Query: 420 DVQNIDFSKNTVAAKSINDWVEENTN 497
+ +N+DFS + ++ DW+ E N
Sbjct: 474 EGENVDFSTDLYPTGNVEDWLLEVEN 499
>SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)
Length = 257
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 382 RILQSFPGTSSIRTSKTLISRRIQSQLS 465
R+ SFPG S TL++R QSQ+S
Sbjct: 65 RLYDSFPGASRSEAESTLLARMRQSQVS 92
>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
Length = 595
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +1
Query: 58 AMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDG 225
+MAAV + +L+ + + + ++KNN +S+ AF+ L L L L+S+G
Sbjct: 36 SMAAVCRPAGLLEPDHFALPVAVESLILKNNSIRSIAKGAFNGLDKLLTLDLSSNG 91
>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 640
Score = 28.7 bits (61), Expect = 4.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 66 CHCRDGDSKQTNDCL 22
CHCRDG+S Q N+ +
Sbjct: 336 CHCRDGESVQVNNAM 350
>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
Length = 672
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 223 HQKLKLTEREEAAPKMPRGQRFSL 152
HQ L + E + ++PK PR +F L
Sbjct: 56 HQNLSINEMDSSSPKRPRQHQFGL 79
>SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 223 HQKLKLTEREEAAPKMPRGQRFSL 152
HQ L + E + ++PK PR +F L
Sbjct: 21 HQNLSINEMDSSSPKRPRQHQFGL 44
>SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 223 HQKLKLTEREEAAPKMPRGQRFSL 152
HQ L + E + ++PK PR +F L
Sbjct: 50 HQNLSINEMDSSSPKRPRQHQFGL 73
>SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 223 HQKLKLTEREEAAPKMPRGQRFSL 152
HQ L + E + ++PK PR +F L
Sbjct: 21 HQNLSINEMDSSSPKRPRQHQFGL 44
>SB_30045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 27.9 bits (59), Expect = 8.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 697 LSIFIIAAFIHHGYFDCF 644
LS++++ +HH YF CF
Sbjct: 298 LSLYVVVVTVHHHYFFCF 315
>SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 223 HQKLKLTEREEAAPKMPRGQRFSL 152
HQ L + E + ++PK PR +F L
Sbjct: 7 HQNLSINEMDSSSPKCPRQHQFGL 30
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,591,099
Number of Sequences: 59808
Number of extensions: 409086
Number of successful extensions: 1159
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -