Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20020
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19313| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-27)                 32   0.50 
SB_58387| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_32547| Best HMM Match : Epimerase (HMM E-Value=3.2e-08)             29   4.7  
SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8)                    29   4.7  
SB_29680| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_19313| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-27)
          Length = 545

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = +3

Query: 234 CLS*PRKLNITFFAPREXYDRNYNLKLIKRALFRSFGIKSTINERQDLIVRDKYKVSGTA 413
           C+S    +N  F+       RN      KR  F++   +ST   RQ+ +V +++ +SG  
Sbjct: 274 CMSFSAAINPIFYLTFLNNFRNTLRLKFKRVTFKNLSRQSTTETRQEKVVMEEHVISGGG 333

Query: 414 AKLGRLTG 437
           ++  ++ G
Sbjct: 334 SRSSKMGG 341


>SB_58387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -2

Query: 180 WNIRLQPRILMSSNNHTWLISPHHHNMMICEVHVLIQPILQSQVRINISRLR 25
           W I LQ  IL+    HT+ +     +  I ++   + P+   +  +N++RL+
Sbjct: 100 WMIALQGNILLIKCRHTYCVDDRLTSFKILDLKAALSPVYFRRSDVNLNRLK 151


>SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 168 LQPRILMSSNNHTWLISPHHHNMMICEVHVLIQPILQSQVRINISRLRHEH 16
           L P    S  +H     PHHH+  I  +H++I     S   I++S+  H H
Sbjct: 508 LSPSTSSSQRHHH---HPHHHHSAIITIHIII--TAPSPPSISLSQRHHHH 553



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 117 PHHHNMMICEVHVLIQPILQSQVRINISRLRHEH 16
           PHHH+  I  +H++I     S   I+ S+  H H
Sbjct: 164 PHHHHSAITTIHIII--TAPSSPSISSSQRNHHH 195



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 117 PHHHNMMICEVHVLIQPILQSQVRINISRLRHEH 16
           PHHH+  I  +H++I     S   I+ S+  H H
Sbjct: 326 PHHHHSAITTIHIII--TAPSSPSISSSQRNHHH 357



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 117 PHHHNMMICEVHVLIQPILQSQVRINISRLRHEH 16
           PHHH+  I  +H++I     S   I+ S+  H H
Sbjct: 392 PHHHHSAITTIHIII--TAPSSPSISSSQRHHHH 423


>SB_32547| Best HMM Match : Epimerase (HMM E-Value=3.2e-08)
          Length = 327

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 294 RNYNLKLIKRALFRSFGIKSTINERQDLIVRDKYKVSGTAAKLGRLTG--YHH 446
           R YNL+L   +   +FG ++ ++   D+ ++    + G A     L G  YHH
Sbjct: 133 RKYNLRLFSPSTIGAFGPETPMDNTPDITIQRPKTIYGVAKVHMELLGEYYHH 185


>SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8)
          Length = 922

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 538 GQPEGPGQQNYGRESANSARLRIPSYSSSAPGRRRPEPDSQK 663
           G P+   Q++ GRE +++++    S  SS P R    P SQK
Sbjct: 716 GSPKSLSQRSRGREGSSASKSNSKSSLSSIPIRVPRPPSSQK 757


>SB_29680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1194

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 532 RSGQPEGPGQQNYGRESANSARLRIPSYSSSAPGR 636
           R G PEG   + Y    A  A LR PS  ++  GR
Sbjct: 28  RQGGPEGLDPEEYYSLFAGGAHLRFPSVDATLRGR 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,975,424
Number of Sequences: 59808
Number of extensions: 431583
Number of successful extensions: 1371
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)