Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0103
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              89   3e-18
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 84   9e-17
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           80   2e-15
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     33   0.22 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               32   0.39 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.1  
SB_26671| Best HMM Match : zf-TRAF (HMM E-Value=0.54)                  29   4.8  
SB_31933| Best HMM Match : PAN (HMM E-Value=3.5e-08)                   28   6.3  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    28   6.3  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              28   6.3  
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_27431| Best HMM Match : HEAT (HMM E-Value=2.4)                      28   8.3  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 38/64 (59%), Positives = 49/64 (76%)
 Frame = +3

Query: 63  IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 242
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 243 TREH 254
           TREH
Sbjct: 61  TREH 64


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 37/39 (94%), Positives = 38/39 (97%)
 Frame = +3

Query: 54  GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 170
           GITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 22  GITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 37.5 bits (83), Expect = 0.010
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +1

Query: 1  GSXKYAWVLDKLKAERE 51
          GS KYAWVLDKLKAERE
Sbjct: 4  GSFKYAWVLDKLKAERE 20



 Score = 33.5 bits (73), Expect = 0.17
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 530 IEALDGHPATCPPPLEQA-PXVFPLQDVYXIGGIGTV 637
           +   +G  +  PP      P   PLQDVY IGGIGTV
Sbjct: 85  VTLFEGLDSILPPSRPSGLPLRLPLQDVYKIGGIGTV 121



 Score = 32.7 bits (71), Expect = 0.29
 Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
 Frame = +3

Query: 471 PWFKGWQVERKE--GKLTENAS----LKLSMAILPPARPHLNKPLXSSPCKTYTKSVVLV 632
           PWFK W +ER +   K   NAS     +   +ILPP+RP    PL   P +   K   + 
Sbjct: 62  PWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPS-GLPL-RLPLQDVYKIGGIG 119

Query: 633 PWPVGXVETWV 665
             PVG VET V
Sbjct: 120 TVPVGRVETGV 130


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 32/67 (47%), Positives = 47/67 (70%)
 Frame = +3

Query: 54  GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 233
           G T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  +
Sbjct: 207 GNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFER 266

Query: 234 NGQTREH 254
            GQTREH
Sbjct: 267 GGQTREH 273



 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 23/49 (46%), Positives = 37/49 (75%)
 Frame = +2

Query: 254 SLLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 400
           ++LA T GVK L++ VNKMD     ++E R+EEIK +++ ++KK+G+NP
Sbjct: 274 AMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +3

Query: 54  GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 209
           GI++  ++  F      + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 64  GISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 105 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 209
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 54  GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 200
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 111 IIDAPGHRDFIKNMITGTSQADCAVLIV 194
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_26671| Best HMM Match : zf-TRAF (HMM E-Value=0.54)
          Length = 901

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 553 RMAIESFNEAFSVSFPSLRSTCHPLNQGHFG*RLQHVVSVPSRNGHESDSSWV 395
           R AI + N    +S+   +S+  P +Q     R    V++P    HES  SW+
Sbjct: 846 RRAIPTRNARRDISYGDSQSSSEPASQSQN--RSSSPVNIPDDGDHESQRSWL 896


>SB_31933| Best HMM Match : PAN (HMM E-Value=3.5e-08)
          Length = 231

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 330 YGGSVESILFTPTMSCLTPRVKASKDA 250
           Y  S+ SILF P +SCL   +K+S DA
Sbjct: 84  YKSSLGSILFLPAVSCL--EIKSSSDA 108


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 99  YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 209
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 114 IDAPGHRDFIKNMITGTSQADCAVLIVA 197
           +D PGH   +  M+ G +  D A+L++A
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIA 96


>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 32  N*RLSVXRYHNRYCSLEVRN 91
           N +L + RYH+RY SLEV N
Sbjct: 867 NPQLVMSRYHSRYVSLEVEN 886


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +2

Query: 314  STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 454
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113


>SB_27431| Best HMM Match : HEAT (HMM E-Value=2.4)
          Length = 195

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 342 LGSLYGGSVESILFTPTMSCLTPRVKASKD 253
           +  L+GG+ E ++ T  +SCL   ++ S D
Sbjct: 104 VAELFGGACEDVMSTANISCLAEALECSDD 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,557,608
Number of Sequences: 59808
Number of extensions: 510063
Number of successful extensions: 1404
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)