Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0098
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50518| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-32)                 28   4.3  
SB_14192| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  

>SB_50518| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-32)
          Length = 375

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 205 SRRTDRHYLVCITNYKICAQRKNQGKK 125
           +RR  R YL C+T    C +R  +GK+
Sbjct: 294 ARRFRRGYLRCLTRILCCGKRSKEGKR 320


>SB_14192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 109 SVLIIIFCLDFFSXRKFCNSLY-RRDNVGQSVYW 207
           SV+  I  L F   + FC++ Y R DNVG   +W
Sbjct: 169 SVIYSISSLSFVVLQTFCHNKYNRHDNVGFESHW 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,376,652
Number of Sequences: 59808
Number of extensions: 268927
Number of successful extensions: 653
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)