Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0093
         (391 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14623| Best HMM Match : BDHCT (HMM E-Value=7.9)                     28   3.1  
SB_57323| Best HMM Match : ShTK (HMM E-Value=0)                        28   3.1  
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_30512| Best HMM Match : GLTT (HMM E-Value=0.00058)                  27   7.2  
SB_10599| Best HMM Match : Tetraspannin (HMM E-Value=1.8e-10)          27   7.2  
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  

>SB_14623| Best HMM Match : BDHCT (HMM E-Value=7.9)
          Length = 441

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 244 PTCKDRCVTWKTDRDTSNVNRGSSPSCPTAH 336
           P+   R    KTD   + V RG+ P C T H
Sbjct: 171 PSINSRGCGIKTDDQKAEVGRGTEPPCTTEH 201


>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
          Length = 911

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 253 KDRCVTWKTDRDTSNVNRGSSPSCP 327
           KDRC  W +  + SN N   S +CP
Sbjct: 342 KDRCPGWASSGECSNNNAWMSNNCP 366


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 205  PSVKIQYKLI-HTKPTCKDRCVTWKTDRDTSNVNRGSSPSCPTA 333
            P  + +++++ +T PT  D    W+  R    V  G S   P+A
Sbjct: 1152 PFTEYEFRVVTYTAPTSGDTSSEWRRQRTAEGVPSGESAMSPSA 1195


>SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1409

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 135  RHGGQKVY*-FRNQFFNECYTGEITPISIGRDAATHK 28
            +H  +K Y  F  QF+ ECY+G    I   RD    +
Sbjct: 1354 KHAKEKGYEIFGVQFYGECYSGPTAEIDYERDGKAER 1390


>SB_30512| Best HMM Match : GLTT (HMM E-Value=0.00058)
          Length = 1083

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 261 VCHLEDRPRHVKRESRELTE 320
           +CH E+  RH++R S++L E
Sbjct: 926 ICHAENVSRHLERASQDLNE 945


>SB_10599| Best HMM Match : Tetraspannin (HMM E-Value=1.8e-10)
          Length = 691

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 82  LYRRNHSDIHRTRRGDTQSEQNTRSI 5
           L ++NHS+I  +RRG+   E N  SI
Sbjct: 46  LAQQNHSNIQPSRRGNEVREYNLNSI 71


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 378 LFPVGHAVCCNNVLMSC 328
           LF  GH +CC++ ++SC
Sbjct: 65  LFRYGHMLCCSSGILSC 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,035,070
Number of Sequences: 59808
Number of extensions: 236819
Number of successful extensions: 577
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)