Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0075
(702 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19753| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_35625| Best HMM Match : DUF296 (HMM E-Value=0.0053) 29 3.6
SB_40167| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_53011| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_5147| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_39173| Best HMM Match : DUF689 (HMM E-Value=3.1) 28 8.4
SB_21284| Best HMM Match : F5_F8_type_C (HMM E-Value=1.8e-21) 28 8.4
SB_37028| Best HMM Match : Ice_nucleation (HMM E-Value=0.0014) 28 8.4
>SB_19753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/54 (51%), Positives = 36/54 (66%)
Frame = +3
Query: 348 HYESVPNLTPDKIEEYENIGFKEICNGKVGVLLLAGGQATRLGFGHPKGMYDVG 509
H+ SV + ++ +E G +EI KV VLLLAGGQ TRLG +PKGMY+VG
Sbjct: 75 HFGSVAR-AGNNLKVWEEKGLQEIGESKVAVLLLAGGQGTRLGVSYPKGMYNVG 127
Score = 48.4 bits (110), Expect = 6e-06
Identities = 20/46 (43%), Positives = 31/46 (67%)
Frame = +1
Query: 139 ETLLRNLKDHGQEHLIKYWSVLSEEQRKQLSDEILKLDLRKCMQHF 276
E L ++LK+HGQE L+K+W+ L E Q+K+ DE+ +D K + F
Sbjct: 4 EKLRKDLKEHGQEQLLKFWNELDENQQKKFYDELKGIDYAKTNRSF 49
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +2
Query: 485 P*GNVRCGLPSRKTLFQIQAERI 553
P G GLPS KTL+Q+QAERI
Sbjct: 120 PKGMYNVGLPSGKTLYQLQAERI 142
>SB_35625| Best HMM Match : DUF296 (HMM E-Value=0.0053)
Length = 885
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 499 YIPLGWPKPSRVA*PPANKSTPTFPLHISLN 407
++ LGW PPA + PT PL S+N
Sbjct: 232 FVALGWKGKEGKTTPPATSTMPTTPLSSSIN 262
>SB_40167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1788
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = +1
Query: 37 QLPGNGP-VHAF*SSYTVDEHLNLFVNKSRSEKMYETLLRNLKDHGQEHLI--KYWSVLS 207
Q+PG V F SS D + + E++Y + + + HG E + W V
Sbjct: 177 QIPGKAKIVRIFTSSTFTDTSVE---RNTLMERIYPRIKQFCQQHGYEFQVVDMRWGVRD 233
Query: 208 EEQRKQLSDEILKLDLRKCMQ 270
E L+ E+ +LR C +
Sbjct: 234 ESTDDHLTSELCMRELRACQE 254
>SB_53011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +1
Query: 148 LRNLKDHGQEHLIKYWSVLSEEQRKQLSDEILKLDLRKCMQHFRGQLNLR 297
L+ L D + + W+ L++ RKQ ++ ++ R C+ + G+ ++R
Sbjct: 323 LKRLGDENDQERARIWADLAKTARKQHVWDVTRVAARFCLLYDNGRWSIR 372
>SB_5147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/65 (24%), Positives = 34/65 (52%)
Frame = +1
Query: 109 VNKSRSEKMYETLLRNLKDHGQEHLIKYWSVLSEEQRKQLSDEILKLDLRKCMQHFRGQL 288
+ ++ K E+ L+ + H+I S +SE++ + + +EI +L+L + + QL
Sbjct: 141 LQSGKTLKKVESALKEQVRPLERHIIADRSWISEQELEDIDEEIRRLELWLSRKILKHQL 200
Query: 289 NLRKK 303
R+K
Sbjct: 201 EKRRK 205
>SB_39173| Best HMM Match : DUF689 (HMM E-Value=3.1)
Length = 371
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = +1
Query: 109 VNKSRSEKMYETLLRNLKDHGQEHLIKYWSVLSEEQRKQLSDEILKLDLRKCMQHFRGQL 288
V E +E +++NLK + EH+ + L ++ +Q+ + K D K M+ R +L
Sbjct: 40 VELKEQELSHEDVVKNLKRNHDEHVTR----LRQDFERQVKEIEAKYD--KKMKALREEL 93
Query: 289 NLRKK 303
LR+K
Sbjct: 94 ELRRK 98
>SB_21284| Best HMM Match : F5_F8_type_C (HMM E-Value=1.8e-21)
Length = 564
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 475 VSATLRECTMWVAIKKNLVPDTSREDPGEFSRW 573
+S C V I++N +PD+S D +SR+
Sbjct: 15 LSTVTYSCNKAVGIEENTIPDSSMTDSSHYSRF 47
>SB_37028| Best HMM Match : Ice_nucleation (HMM E-Value=0.0014)
Length = 916
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/70 (22%), Positives = 31/70 (44%)
Frame = +3
Query: 390 EYENIGFKEICNGKVGVLLLAGGQATRLGFGHPKGMYDVGCHQEKPCSRYKPRGSWRVQQ 569
EY ++G +E + + G + ++T +G G+ + G Y G W +
Sbjct: 15 EYRSVGVQEYGSQEYGSTGVLEYRSTGIGEYRSMGVQEYG---SMGVQEYGSTGRWGYRS 71
Query: 570 MAAEKYGNEG 599
M ++YG+ G
Sbjct: 72 MGVQEYGSTG 81
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,094,795
Number of Sequences: 59808
Number of extensions: 470813
Number of successful extensions: 1159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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