Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0068
(718 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35) 63 2e-10
SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 2e-07
SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5) 47 2e-05
SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05
SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_58248| Best HMM Match : Pox_A32 (HMM E-Value=0.97) 30 1.6
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 30 2.2
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 29 3.8
SB_21778| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_26157| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_36990| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)
Length = 521
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = -2
Query: 384 HSEHWAEITLRQHPRGPSQCFVLIRQSDSPCPCQF 280
++EHWAEITLRQH PSQCFVLI+QSDSP CQF
Sbjct: 48 NNEHWAEITLRQHRFRPSQCFVLIKQSDSPSHCQF 82
>SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 53.6 bits (123), Expect = 2e-07
Identities = 31/59 (52%), Positives = 39/59 (66%)
Frame = -1
Query: 691 ETMKVSGFSATIARNRSPTYATXSHVSLQCQTRVNSTGSSFPADSPKPVPLAVVSLDSR 515
+T++V F IA +PTY+T + + +STGSSFPAD KPVPLAVVSLDSR
Sbjct: 75 KTIRVVVFHRRIA---TPTYSTPLMSFHRVRLESSSTGSSFPADCAKPVPLAVVSLDSR 130
>SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)
Length = 167
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +3
Query: 372 SALNVNVKKFKQARVNGGSNYDSL 443
+ALNV VKKF QARVNGGSNYDSL
Sbjct: 28 AALNVKVKKFNQARVNGGSNYDSL 51
>SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 45.2 bits (102), Expect = 5e-05
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = +2
Query: 455 MPRHLISDAHEWINEIPT 508
MPRHLISDAHEWINEIPT
Sbjct: 1 MPRHLISDAHEWINEIPT 18
>SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +3
Query: 375 ALNVNVKKFKQARVNGGSNYDSL 443
ALNV VKKF QARVNG SNYDSL
Sbjct: 2 ALNVKVKKFNQARVNGWSNYDSL 24
>SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +3
Query: 369 PSALNVNVKKFKQARVNGGSNYDS 440
PSALNV VKKF QARVNGG +S
Sbjct: 31 PSALNVKVKKFNQARVNGGDPLES 54
>SB_58248| Best HMM Match : Pox_A32 (HMM E-Value=0.97)
Length = 540
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 2 RVGFGREADAAGAGSGRCSCVMFVLAS*YFNIMRPQ--KLYIFNMTLAKIVLRFGLDP 169
R G E +G+G +C MFV+A N+M Q + T ++ R G+DP
Sbjct: 154 RDGVHLEIKRTASGTGTVNCHMFVVADALMNLMNGQLESIQYLAHTPERVSARSGMDP 211
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 221 GFVSCAIGTILSTAVQRSAQ--NWHGQGESDCLIKTKHCDGPRGC 349
G CA G+ ST + + + WH G S C+ ++ CDG C
Sbjct: 109 GMKDCADGSDESTCGEGTCRPDEWHCIGTSRCIPLSRVCDGTNDC 153
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 299 ESDCLIKTKHCDGPRGC*RNVISAQCSE 382
E DC+ +KHCDG C C E
Sbjct: 73 EGDCIPLSKHCDGTWDCQHGTDEMDCQE 100
>SB_21778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 4 CRVWTGSGCXRCRVWSMFVRYVRFSELVF 90
CRV T C RCRV++ F Y+R L F
Sbjct: 101 CRVCTCQSCLRCRVFT-FQSYLRCRVLTF 128
>SB_26157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1097
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 643 SPTYATXSHVSLQCQTRVNSTGSSFPADSPKPVPLAVVSLDS 518
S TY+T S + + T S+G+ P + P L + +LDS
Sbjct: 898 SVTYSTPSSIVVTTPTTPTSSGAGSPTEIALPTALPMPALDS 939
>SB_36990| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 253 QNRADRARNETDTTLRLGRSAEGRRTRVR 167
+NRA RA + L+ R EGRRTR R
Sbjct: 52 ENRALRAHRKCGIILQAFRKFEGRRTRTR 80
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,398,391
Number of Sequences: 59808
Number of extensions: 427057
Number of successful extensions: 954
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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