Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0061
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20385| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   3e-16
SB_54513| Best HMM Match : Mod_r (HMM E-Value=0.23)                    38   0.009
SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.035
SB_52566| Best HMM Match : Baculo_FP (HMM E-Value=1.7)                 31   0.99 
SB_46729| Best HMM Match : DUF646 (HMM E-Value=1.9)                    31   1.3  
SB_39887| Best HMM Match : DUF1127 (HMM E-Value=3.2)                   31   1.3  
SB_27389| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_6471| Best HMM Match : HALZ (HMM E-Value=7)                         31   1.3  
SB_936| Best HMM Match : DUF1127 (HMM E-Value=3.2)                     31   1.3  
SB_48988| Best HMM Match : DUF1127 (HMM E-Value=1.5)                   30   1.7  
SB_39791| Best HMM Match : RVT_1 (HMM E-Value=0.083)                   30   2.3  
SB_34915| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)                   29   3.0  
SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_34114| Best HMM Match : Transthyretin (HMM E-Value=1.1e-13)         29   5.3  
SB_11994| Best HMM Match : ERM (HMM E-Value=0.28)                      28   9.2  

>SB_20385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 43/79 (54%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
 Frame = +3

Query: 513 WTTREFQELINFDPEQ--QIVYLELGCGVGNMIFPLVEEGFTNFFFYAW*FSPRAVEFVQ 686
           WTTREF EL+N + E+  + V LE GCGVGN+I PL+EEG+ NF+F+A  FSPRAV FV+
Sbjct: 417 WTTREFTELLNVEDEKLNEKVLLEAGCGVGNLINPLLEEGY-NFYFHACDFSPRAVNFVK 475

Query: 687 RNSLYDQKPHEGFLVLDLT 743
            +  YD+     F   DLT
Sbjct: 476 ESPFYDEAKVNAF-QCDLT 493



 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = +1

Query: 427 KATRLEKDAKRHWDLFYKRNETKFFRDR 510
           K  +LE+DA+++WDLFYKRN T FF+DR
Sbjct: 388 KRNKLEQDARKNWDLFYKRNSTNFFKDR 415


>SB_54513| Best HMM Match : Mod_r (HMM E-Value=0.23)
          Length = 603

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
 Frame = +1

Query: 262 DKVTYIKNRIKMETDIPAHVEETSSSDTFVHRLKELSQEEIKLLQNQNTRLVPEAKATRL 441
           +K+  +K+ +K   D+ + + E  +S  F+H   ++  +++K L+++NT L  E K  ++
Sbjct: 416 EKLRPMKSSLK---DLSSQLAEAVNSLAFLHDQCDILTKKVKFLESRNTSLETENKLIKV 472

Query: 442 E--------KDAKRHWDLFYKRNETKFFRDRI 513
           E           K+  D+FY  +E +  RDRI
Sbjct: 473 ELNKMAGDLNTTKKSLDVFYGEHERRSKRDRI 504


>SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 35.9 bits (79), Expect = 0.035
 Identities = 14/35 (40%), Positives = 25/35 (71%)
 Frame = +3

Query: 516 TTREFQELINFDPEQQIVYLELGCGVGNMIFPLVE 620
           TT+EF E++N  P Q++  L++GCG+G   F +++
Sbjct: 42  TTKEFVEMLNLAPGQKV--LDVGCGIGGSAFYMIK 74


>SB_52566| Best HMM Match : Baculo_FP (HMM E-Value=1.7)
          Length = 350

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 16/61 (26%), Positives = 36/61 (59%)
 Frame = +1

Query: 262 DKVTYIKNRIKMETDIPAHVEETSSSDTFVHRLKELSQEEIKLLQNQNTRLVPEAKATRL 441
           +K+  +K+ +K   D+ + + E  +S  F+H   ++  +++K L+++NT L  E K  ++
Sbjct: 16  EKLRPMKSSLK---DLSSQLAEAVNSLAFLHDQCDILSKKVKFLESRNTSLETENKLIKV 72

Query: 442 E 444
           E
Sbjct: 73  E 73


>SB_46729| Best HMM Match : DUF646 (HMM E-Value=1.9)
          Length = 202

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/61 (26%), Positives = 36/61 (59%)
 Frame = +1

Query: 262 DKVTYIKNRIKMETDIPAHVEETSSSDTFVHRLKELSQEEIKLLQNQNTRLVPEAKATRL 441
           +K+  +K+ +K   D+ + + E  +S  F+H   ++  +++K L+++NT L  E K  ++
Sbjct: 18  EKLRPMKSSLK---DLSSQLAEAVNSLAFLHDQCDILTKKVKFLESRNTSLETENKLIKV 74

Query: 442 E 444
           E
Sbjct: 75  E 75


>SB_39887| Best HMM Match : DUF1127 (HMM E-Value=3.2)
          Length = 224

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/61 (26%), Positives = 36/61 (59%)
 Frame = +1

Query: 262 DKVTYIKNRIKMETDIPAHVEETSSSDTFVHRLKELSQEEIKLLQNQNTRLVPEAKATRL 441
           +K+  +K+ +K   D+ + + E  +S  F+H   ++  +++K L+++NT L  E K  ++
Sbjct: 18  EKLRPMKSSLK---DLSSQLAEAVNSLAFLHDQCDMLTKKVKFLESRNTSLETENKLIKV 74

Query: 442 E 444
           E
Sbjct: 75  E 75


>SB_27389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/61 (26%), Positives = 36/61 (59%)
 Frame = +1

Query: 262 DKVTYIKNRIKMETDIPAHVEETSSSDTFVHRLKELSQEEIKLLQNQNTRLVPEAKATRL 441
           +K+  +K+ +K   D+ + + E  +S  F+H   ++  +++K L+++NT L  E K  ++
Sbjct: 18  EKLRPMKSSLK---DLSSQLAEAVNSLAFLHDQCDILTKKVKFLESRNTSLETENKLIKV 74

Query: 442 E 444
           E
Sbjct: 75  E 75


>SB_6471| Best HMM Match : HALZ (HMM E-Value=7)
          Length = 108

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/61 (26%), Positives = 36/61 (59%)
 Frame = +1

Query: 262 DKVTYIKNRIKMETDIPAHVEETSSSDTFVHRLKELSQEEIKLLQNQNTRLVPEAKATRL 441
           +K+  +K+ +K   D+ + + E  +S  F+H   ++  +++K L+++NT L  E K  ++
Sbjct: 18  EKLRPMKSSLK---DLSSQLAEAVNSLAFLHDQCDILTKKVKFLESRNTSLETENKLIKV 74

Query: 442 E 444
           E
Sbjct: 75  E 75


>SB_936| Best HMM Match : DUF1127 (HMM E-Value=3.2)
          Length = 280

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/61 (26%), Positives = 36/61 (59%)
 Frame = +1

Query: 262 DKVTYIKNRIKMETDIPAHVEETSSSDTFVHRLKELSQEEIKLLQNQNTRLVPEAKATRL 441
           +K+  +K+ +K   D+ + + E  +S  F+H   ++  +++K L+++NT L  E K  ++
Sbjct: 18  EKLRPMKSSLK---DLSSQLAEAVNSLAFLHDQCDILTKKVKFLESRNTSLETENKLIKV 74

Query: 442 E 444
           E
Sbjct: 75  E 75


>SB_48988| Best HMM Match : DUF1127 (HMM E-Value=1.5)
          Length = 270

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/61 (26%), Positives = 35/61 (57%)
 Frame = +1

Query: 262 DKVTYIKNRIKMETDIPAHVEETSSSDTFVHRLKELSQEEIKLLQNQNTRLVPEAKATRL 441
           +K+  +K+ +K   D+ + + E  +S  F+H   ++  + +K L+++NT L  E K  ++
Sbjct: 18  EKLRPMKSSLK---DLSSQLAEAVNSLAFLHDQCDILTKNVKFLESRNTSLETENKLIKV 74

Query: 442 E 444
           E
Sbjct: 75  E 75


>SB_39791| Best HMM Match : RVT_1 (HMM E-Value=0.083)
          Length = 497

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/47 (27%), Positives = 28/47 (59%)
 Frame = +1

Query: 304 DIPAHVEETSSSDTFVHRLKELSQEEIKLLQNQNTRLVPEAKATRLE 444
           D+ + + E  +S  F+H   ++  +++K L+++NT L  E K  ++E
Sbjct: 7   DLSSQLAEAVNSLAFLHDQCDILTKKVKFLESRNTSLETEDKLIKVE 53


>SB_34915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/69 (24%), Positives = 36/69 (52%)
 Frame = +1

Query: 292 KMETDIPAHVEETSSSDTFVHRLKELSQEEIKLLQNQNTRLVPEAKATRLEKDAKRHWDL 471
           +M TD P+ V E ++ D      ++  + + K+ +N    +V E    + E +A + WD 
Sbjct: 15  RMLTD-PSKVFEHNAWDNVEWGEEQEEEAQAKIAENAAV-MVDEQLKEKYENEANQFWDE 72

Query: 472 FYKRNETKF 498
           FY +++ ++
Sbjct: 73  FYTQHQNRY 81


>SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)
          Length = 968

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 376 LVTVLSACERMCHCCLFLQH 317
           L+ V   C R+C+CCLF  H
Sbjct: 168 LIYVTQWCRRVCYCCLFDSH 187


>SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/61 (26%), Positives = 35/61 (57%)
 Frame = +1

Query: 262 DKVTYIKNRIKMETDIPAHVEETSSSDTFVHRLKELSQEEIKLLQNQNTRLVPEAKATRL 441
           +K+  +K+ +K   D+ + + E  +S  F+H   ++  +++K L+++NT L  E K  + 
Sbjct: 18  EKLRPMKSSLK---DLSSQLAEAVNSLAFLHDQCDMLTKKVKFLESRNTSLETENKLIKR 74

Query: 442 E 444
           E
Sbjct: 75  E 75


>SB_34114| Best HMM Match : Transthyretin (HMM E-Value=1.1e-13)
          Length = 626

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +1

Query: 319 VEETSSSDTFVHRLKELSQEEI-KLLQNQNTRLVPEA 426
           VE  + SD+F+ R  + S+EEI +LL+ ++TR   +A
Sbjct: 31  VESPTCSDSFLGRFGDSSEEEIQRLLEERSTRNTKKA 67


>SB_11994| Best HMM Match : ERM (HMM E-Value=0.28)
          Length = 465

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = +1

Query: 262 DKVTYIKNRIKMETDIPAHVEETSSSDTFVHRLKELSQEEIKLLQNQNTRLVPEAKATRL 441
           ++   ++ R++ME+   A  E+ +       RL +L QEE++ L+NQ T    + K    
Sbjct: 175 EEFNILQQRLEMESVCRAEAEKLALDVGLQSRL-DLVQEEVENLENQLTEAQKKEKDAED 233

Query: 442 EKDAKRH 462
           +   ++H
Sbjct: 234 KSKLQKH 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,866,956
Number of Sequences: 59808
Number of extensions: 399621
Number of successful extensions: 1081
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)