Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0058
         (427 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26154| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.8  
SB_49250| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_18996| Best HMM Match : zf-C4_Topoisom (HMM E-Value=3.5)            27   4.9  
SB_36152| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_30881| Best HMM Match : NAD_binding_3 (HMM E-Value=0.91)            27   6.5  
SB_22322| Best HMM Match : Neurochondrin (HMM E-Value=2.9e-08)         27   8.6  
SB_11006| Best HMM Match : Viral_DNA_bi (HMM E-Value=3.9)              27   8.6  

>SB_26154| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 118 LLYLYSRKVDRENHLYPPSMLPTPVLNGYLTV 213
           +LY  ++ V    + YPP +LP PV  GY  +
Sbjct: 66  VLYSNNQMVPNLAYPYPPGVLPMPVYMGYAPI 97


>SB_49250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 638

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +1

Query: 142 VDRENHLYPPSMLPTPVLNGYLTVTQVNGILYKLFTYSKFQYLQ*KSIF 288
           VDR ++ YPPS+    VLNG+     +NG+    F+  +   LQ +S F
Sbjct: 31  VDRLDY-YPPSIPSLGVLNGFHGEPMMNGVPVNGFSRYREGQLQRRSPF 78


>SB_18996| Best HMM Match : zf-C4_Topoisom (HMM E-Value=3.5)
          Length = 475

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 123 ISIF*EGGSRESFVSAINVANPSFKWVFDCYTGKRNTL 236
           + +F E G   +F +AI  A+PS  WV  C T K   L
Sbjct: 162 LEVFREDGDGVAFDAAIEQAHPSDMWV--CSTNKMGAL 197


>SB_36152| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 115 VLLYLYSRKVDRENHLYPPSMLPTPVLN 198
           + L+L +R+V R N   PPS   TPVL+
Sbjct: 64  IRLFLTARRVGRANEHKPPSYDVTPVLS 91


>SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 804

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 115 VLLYLYSRKVDRENHLYPPSMLPTPVLNGYLTVT 216
           +L YLY       N   PP  +P P++N  L++T
Sbjct: 324 LLYYLYDYVTSPAN--LPPGPIPLPIINNLLSIT 355


>SB_30881| Best HMM Match : NAD_binding_3 (HMM E-Value=0.91)
          Length = 337

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 106 CIHVLLYLYSRKVDRENHLYPPSMLPTPVLNGYLTVTQVNGILYKL 243
           C+ VLL+ Y + +D    L PPS   TP       + Q+ GI+Y++
Sbjct: 80  CLEVLLFYY-KSLD----LPPPSCTGTPSAKSLPLLPQMAGIMYQV 120


>SB_22322| Best HMM Match : Neurochondrin (HMM E-Value=2.9e-08)
          Length = 561

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 153 ESFVSAINVANPSFKWVFDCYTGKRNTLQ 239
           E+F SA  + N + +W  D Y G ++ LQ
Sbjct: 233 EAFRSAQKMTNQADEWKLDVYRGMKDVLQ 261


>SB_11006| Best HMM Match : Viral_DNA_bi (HMM E-Value=3.9)
          Length = 352

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 153 ESFVSAINVANPSFKWVFDCYTGKRNTLQ 239
           E+F SA  + N + +W  D Y G ++ LQ
Sbjct: 20  EAFRSAQKMTNQADEWKLDVYRGMKDVLQ 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,877,959
Number of Sequences: 59808
Number of extensions: 256384
Number of successful extensions: 491
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)