Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0053
(605 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26361| Best HMM Match : fn3 (HMM E-Value=0) 32 0.41
SB_53447| Best HMM Match : DUF924 (HMM E-Value=3.6e-17) 31 0.96
SB_26083| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022) 29 2.2
SB_8135| Best HMM Match : GBP_PSP (HMM E-Value=0.64) 29 2.9
SB_29890| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_6548| Best HMM Match : Helicase_C (HMM E-Value=0.003) 29 3.9
SB_4355| Best HMM Match : DUF1421 (HMM E-Value=6.6) 29 3.9
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) 28 6.7
SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18) 28 6.7
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37) 27 8.9
SB_18623| Best HMM Match : HC2 (HMM E-Value=0.49) 27 8.9
SB_10832| Best HMM Match : ArsD (HMM E-Value=7.8) 27 8.9
SB_45| Best HMM Match : Pkinase (HMM E-Value=0) 27 8.9
>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1898
Score = 31.9 bits (69), Expect = 0.41
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -2
Query: 544 RRTLWQRSWRVPLLD-WPFVLFLFIGASVLVPPRGRVQEGRVXXL*GVRGSTGIGRNRSV 368
+R L+QRSW + L+ + +L L I + + R R + V L GST
Sbjct: 1466 QRALYQRSWFIALVSVFAVILVLVIIGFIFIQRRRRKESQHVERL-STAGSTSTRTTADT 1524
Query: 367 EVRAGVAKAV 338
+R+G+ V
Sbjct: 1525 SIRSGILPGV 1534
>SB_53447| Best HMM Match : DUF924 (HMM E-Value=3.6e-17)
Length = 585
Score = 30.7 bits (66), Expect = 0.96
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Frame = +1
Query: 115 LCSPDVAYHPKVTFLTVKIRVK*LIN-KPTDNTKKP*DS------NASKTYTXPH 258
+CSP + YHPK+ ++ I + ++N P D P DS KT PH
Sbjct: 371 VCSPRIVYHPKMDIYSLGIILLTMVNGSPPDTQAYPLDSQTVLLQKVDKTQCYPH 425
>SB_26083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 624
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 473 DKQEENKRPVQKWYPPGTLPKCPPSMAMRIT 565
D+++EN P K PP PK PPS + +T
Sbjct: 259 DEKKENTSPKSKTKPPPVPPKRPPSFLIDLT 289
>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
Length = 1514
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +3
Query: 348 ATPARTSTDRFLPIPVLPRTPHKXXTRPSCT-RPRGG---TKTEAPINRKRTKGQSRSGT 515
+TP S R P P TP +R S + +GG TKT ++++GQ+ T
Sbjct: 1371 STPRSRSRSR-TRTPSTPFTPSTTSSRASSRGKAKGGAKTTKTTKKCTTRKSRGQNGDTT 1429
Query: 516 LQERCQSVRR 545
+ +C + RR
Sbjct: 1430 TKTKCITTRR 1439
>SB_8135| Best HMM Match : GBP_PSP (HMM E-Value=0.64)
Length = 225
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 90 ETPLANPSPLLSGCRISPEGNISNCEDKSKIAHQQTYRQ--YKEALRQQRQQDIYXPAQN 263
+ P ++P+PLL CR P +++ + IAH Q+ +Q Y + R D + P N
Sbjct: 145 DLPDSDPAPLLVSCRRLP---VTSTDVIGTIAHAQSKQQARYMTIVHGPRPGDGFNPRYN 201
Query: 264 S 266
S
Sbjct: 202 S 202
>SB_29890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 243
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 63 LSRAQTLSSETPLANPSPLLSGCRISPEGNISN 161
LS Q LS++ PL+N PL + +S +G +SN
Sbjct: 33 LSNKQPLSNKQPLSNKQPLSNKQPLSNKGPLSN 65
>SB_6548| Best HMM Match : Helicase_C (HMM E-Value=0.003)
Length = 1063
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = +3
Query: 354 PARTSTDRFLPIPVLPRTPHKXXTRPS-----CTRPRGGTKTEAPINRKRTKGQSRSGTL 518
P+RT T RF+P V P+ P + + CT P + ++P + ++ G S +
Sbjct: 352 PSRTDTKRFVPGAVKPKNPRQAPAKSDDVIDLCTPPSTPGEQKSPREQMQSTGADVSDVI 411
>SB_4355| Best HMM Match : DUF1421 (HMM E-Value=6.6)
Length = 642
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = +3
Query: 354 PARTSTDRFLPIPVLPRTPHKXXTRPS-----CTRPRGGTKTEAPINRKRTKGQSRSGTL 518
P+RT T RF+P V P+ P + + CT P + ++P + ++ G S +
Sbjct: 207 PSRTDTKRFVPGAVKPKNPRQAPAKSDDVIDLCTPPSTPGEQKSPREQMQSTGADVSDVI 266
>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
Length = 1338
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +3
Query: 387 IPVLPRTPHKXXTRPSCTRPRGGTKTEAPINRKRTKGQSRSGTLQERCQSVRR 545
IP P + +RPS +RPR E + + R LQE+ + +R+
Sbjct: 886 IPASPGIANSPASRPSPSRPRINFDAELVMIKANKDSSERIRLLQEKIKEMRK 938
>SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1520
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 437 HSTPRRYQNGSTDKQEENKRP 499
H TP Y+ STDK E +P
Sbjct: 488 HKTPEMYEKKSTDKNENQPKP 508
>SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18)
Length = 563
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Frame = +3
Query: 351 TPARTSTDRFLPIP-VLPRTPHKXXTRPSCTRPRGGTKTEAPINRKRTKGQSRSGTLQER 527
TP R F P LP+ PS G + R RTK +S SGT
Sbjct: 355 TPLRADVPPFAGYPPALPQYFASDLNMPSFGPGMPGIMANRNLTRTRTKSRSNSGTSCAN 414
Query: 528 CQSVR 542
C + +
Sbjct: 415 CHTTQ 419
>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
Length = 1188
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 165 EDKSKIAHQQTYRQYKEALRQQRQQDIYXPAQNSP 269
E + + H Q Y Q ++ +QQ + PAQ SP
Sbjct: 507 ETQQQFHHSQVYSQAQQHQLVSQQQQMLSPAQQSP 541
>SB_18623| Best HMM Match : HC2 (HMM E-Value=0.49)
Length = 384
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +3
Query: 399 PRTPHKXXTRPSCTRPRGGTKTE---APINRKRTKGQSRSGTLQERCQ 533
PR P K P R +G K E + R+R+KG ++ GTL+ Q
Sbjct: 100 PREPSKGT--PKRERSKGTLKREHSKGTLKRERSKGNAQKGTLKGNAQ 145
>SB_10832| Best HMM Match : ArsD (HMM E-Value=7.8)
Length = 189
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 69 RAQTLSSETPLANPSPLLSGCRISPEGNISNCEDKSK-IAHQQTYRQYK 212
+A+T TP+ P+P+L +SP+ ++ ++ I QQ +Q K
Sbjct: 26 QAKTSPQTTPVGQPTPILPNTPMSPQSGMTTVTINARPILPQQPQQQRK 74
>SB_45| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 851
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 69 RAQTLSSETPLANPSPLLSGCRISPEGNISNCEDKSKIA 185
R +TL P NP PLL ++ E + C ++SK+A
Sbjct: 303 RIKTLLKLIPFVNPLPLLEELLLNLEKGTAFCCNESKLA 341
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,777,549
Number of Sequences: 59808
Number of extensions: 391686
Number of successful extensions: 1415
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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