Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0052
         (779 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)              95   8e-20
SB_3235| Best HMM Match : Laminin_EGF (HMM E-Value=3.6e-13)            35   0.085
SB_29805| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.45 
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)                 32   0.60 
SB_47117| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)              31   1.0  
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)                 29   3.2  
SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             29   4.2  
SB_50855| Best HMM Match : Ras (HMM E-Value=0)                         29   5.6  
SB_5459| Best HMM Match : DUF1138 (HMM E-Value=9.3)                    29   5.6  
SB_22169| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)                 28   9.8  

>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1291

 Score = 94.7 bits (225), Expect = 8e-20
 Identities = 47/82 (57%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
 Frame = +2

Query: 455 ASIGPGPGRRQPCFGLPDNLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 634
           A +   PG   P      N ++NFAF+E RS++ETTQAMAFDGI  +GQ+LKIRRP DYQ
Sbjct: 590 AKLNTAPGN--PVIAAQINTEQNFAFIELRSVEETTQAMAFDGIILQGQALKIRRPKDYQ 647

Query: 635 PMPG-TENPAINVPAGVISTVV 697
           P+PG +EN +++VP GV+STVV
Sbjct: 648 PIPGMSENASVHVP-GVVSTVV 668



 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 18/104 (17%)
 Frame = +3

Query: 252 GFEHITPLQYKAMQAAGQI---------PANIVADT-------PQAAVPVV--GSTITRQ 377
           G+E ++ ++YK M+A GQI         PA  ++ T       P +AV  +  GS +TRQ
Sbjct: 502 GYEQVSAMEYKTMRANGQIAAPAIGTVIPATALSATQSGASVLPASAVASLPHGSQMTRQ 561

Query: 378 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQI 509
           ARRLYVGNIPFGVTE   +EFFN +M  + L  A GNPV+A QI
Sbjct: 562 ARRLYVGNIPFGVTENLMIEFFNAKMKEAKLNTAPGNPVIAAQI 605



 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +1

Query: 700 DSPHKIFIGGLPNYLNEDQVK 762
           DSPHKIFIGGLPNYLNEDQVK
Sbjct: 670 DSPHKIFIGGLPNYLNEDQVK 690


>SB_3235| Best HMM Match : Laminin_EGF (HMM E-Value=3.6e-13)
          Length = 170

 Score = 34.7 bits (76), Expect = 0.085
 Identities = 22/83 (26%), Positives = 31/83 (37%)
 Frame = +2

Query: 245 RRRVRAYHAITIQGDASGGSDSCQYCRRHTTSCRAGGGFDYNTSSAKVICRQHTLWRHRR 424
           +R    +H + + GD   G      C  HT  C A  G  YN       C+ +T   H  
Sbjct: 88  KRCAPGHHRVNVSGDPFYGKCIPCNCNNHTNDCYADTGLCYN-------CKHNTAGEHCE 140

Query: 425 RNNGVFQSTNASIGPGPGRRQPC 493
             +  F    A   PG  ++ PC
Sbjct: 141 LCDDGFYGNAADGTPGDCKQCPC 163


>SB_29805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 21/76 (27%), Positives = 31/76 (40%)
 Frame = +2

Query: 461 IGPGPGRRQPCFGLPDNLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPM 640
           +GPGP     CF +P       A LE RS   TT  +  + +    QS+        QP+
Sbjct: 196 LGPGPPHSASCFDMPTRTFTPVALLENRS---TTSRVPLEALQMLTQSVAKCGQEYIQPL 252

Query: 641 PGTENPAINVPAGVIS 688
           P  E      P  +++
Sbjct: 253 PLKEEEQKKSPLALLA 268


>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
          Length = 392

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 312 ANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 449
           A  +A   QA          R  R ++VGNIP+  +EE+  E F++
Sbjct: 2   ATALAXIAQAQQKQSSGAADRSLRSVFVGNIPYEASEEQLKEIFSE 47


>SB_47117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 869

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 464 GPGPGRRQPCFGLPDNLDKNFAFLEFRSIDETTQAMAFDGINFKGQS 604
           G G G   P   +P N D+++A LE R+++       FD +   G+S
Sbjct: 418 GSGRGLVHPLLPMPSNADQDYASLEIRTLEPDAPNSIFDSMQ-SGES 463


>SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)
          Length = 466

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 251 RVRAYHAITIQGDASGGSDSCQYCRRHTTSC 343
           R++ YH   +  D S  SDSC+ CR  T  C
Sbjct: 90  RIKRYH---VDVDVSSSSDSCRICRDSTAGC 117


>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
          Length = 1118

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 384 RLYVGNIPFGVTEEETMEFF 443
           R+Y+G +P+G TE++   FF
Sbjct: 4   RVYLGRLPYGTTEDDVRRFF 23


>SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +2

Query: 332 TTSCRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVFQSTNASIGPGPGRRQP-CFGLPD 508
           T + R  G   +N    ++ C Q   + HR+R + V+       G G  + Q    G   
Sbjct: 71  TVAARRSGSPIFNFKEHRLFCGQPAKYNHRKRGSDVYPIPKGHDGEGEEKYQKRTLGRRT 130

Query: 509 NLDKNFAFLE 538
           +  K+ AFL+
Sbjct: 131 DTIKDAAFLK 140


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 366 ITRQARRLYVGNIPFGVTEEETMEFFNQ 449
           + R+ R L+VGN+P  + EE+ ++ F +
Sbjct: 1   MVRETRHLWVGNLPENIREEDIVKHFTR 28


>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
          Length = 733

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 390 YVGNIPFGVTEEETMEFFNQQMHLSG 467
           ++GN+P+ V  E+ +EFF+    L G
Sbjct: 280 FLGNLPYDVEREDILEFFSSVKSLRG 305


>SB_5459| Best HMM Match : DUF1138 (HMM E-Value=9.3)
          Length = 270

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/61 (29%), Positives = 22/61 (36%)
 Frame = +2

Query: 530 FLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPGTENPAINVPAGVISTVVLIPH 709
           F+   SI  TT             S       D+ P P TEN    V  GVI    ++P 
Sbjct: 58  FIYSESISATTSCGTSVTSEISDDSFIDINDEDFDPFPKTENQGTLVGVGVIHAKAVMPR 117

Query: 710 T 712
           T
Sbjct: 118 T 118


>SB_22169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = +2

Query: 251 RVRAYHAITIQGDASGGSDSCQYCRRHTTSCRAGGGFDYNTSSAK 385
           +++  H ++ + + S  S  C  CR  T  C++      N S+++
Sbjct: 60  KIKVVHTLSARPELSHCSGVCNICRHRTQECKSDDNKSLNGSNSR 104


>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
          Length = 67

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 378 ARRLYVGNIPFGVTEEETMEFF 443
           + R+Y+G +P+G  E++  +FF
Sbjct: 2   SNRVYLGRLPYGTREDDVKKFF 23


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,709,914
Number of Sequences: 59808
Number of extensions: 522680
Number of successful extensions: 1459
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1458
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)