Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0048
         (805 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_240| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-31)                   29   5.8  
SB_40634| Best HMM Match : fn3 (HMM E-Value=0.058)                     28   7.7  
SB_28258| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_240| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-31)
          Length = 308

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 335 FSSYNGTSVKTTVDLYILVYKSTVRYEVFL 424
           F+SYN T +  TV ++ L   S  RY V L
Sbjct: 95  FTSYNVTVITLTVSIFTLTLLSVERYRVLL 124


>SB_40634| Best HMM Match : fn3 (HMM E-Value=0.058)
          Length = 293

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/69 (24%), Positives = 28/69 (40%)
 Frame = -3

Query: 488 HRTVAPSSLII*KQHCLRRKLPKRPHTSP*IYILIYINLRWFLRMFRYNY*TVHPIDLKL 309
           H T+APS   +  +  L R +  R   +  +     + + W    F+Y   T + +  K 
Sbjct: 63  HTTLAPSLSAVPVEETLCRNITHRLSNTHSLATKFNVTITWVQPRFQYGTITSYSVAYKK 122

Query: 308 GIHVENTCT 282
           G   E T T
Sbjct: 123 GDEAEKTAT 131


>SB_28258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/69 (24%), Positives = 28/69 (40%)
 Frame = -3

Query: 488  HRTVAPSSLII*KQHCLRRKLPKRPHTSP*IYILIYINLRWFLRMFRYNY*TVHPIDLKL 309
            H T+APS   +  +  L R +  R   +  +     + + W    F+Y   T + +  K 
Sbjct: 888  HTTLAPSLSAVPVEETLCRNITHRLSNTHSLATKFNVTITWVQPRFQYGTITSYSVAYKK 947

Query: 308  GIHVENTCT 282
            G   E T T
Sbjct: 948  GDEAEKTAT 956


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,481,594
Number of Sequences: 59808
Number of extensions: 447052
Number of successful extensions: 697
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)