Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0095
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12773| Best HMM Match : DUF1480 (HMM E-Value=2.1)                   88   8e-18
SB_59328| Best HMM Match : Gemini_AC4_5 (HMM E-Value=7)                28   7.2  
SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)                  28   7.2  
SB_6350| Best HMM Match : Acyl_transf_1 (HMM E-Value=0.87)             28   7.2  

>SB_12773| Best HMM Match : DUF1480 (HMM E-Value=2.1)
          Length = 505

 Score = 87.8 bits (208), Expect = 8e-18
 Identities = 37/83 (44%), Positives = 54/83 (65%)
 Frame = +1

Query: 1   RKDVTKNGCCDPEADFTERYXXXXXXXXXXXVEYEHCVSCCLDPGKRDMLEIVLSKLSTE 180
           RKD++ +GCC  + + T RY             YE+CVSCCLDP ++++L  VL+   T 
Sbjct: 183 RKDLSASGCCHSDGETTHRYNCESCQVNNCCSIYENCVSCCLDPKQKELLREVLNVWRTA 242

Query: 181 KSILFRSLTDDYELCLTKCRTSS 249
            +++ +S+TD +ELCLTKCRTSS
Sbjct: 243 PNVILKSITDQFELCLTKCRTSS 265


>SB_59328| Best HMM Match : Gemini_AC4_5 (HMM E-Value=7)
          Length = 83

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 582 LMNFYLFIRYIFNFLKFHGTHKNLHPFKISNLNLLVLSITT 704
           + +FY FI +I NF+     ++   PF I+ LN +++S +T
Sbjct: 5   IKSFYGFIHFI-NFVSSGWVNETADPFTINPLNTILVSSST 44


>SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)
          Length = 1362

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -3

Query: 733  DRESDFVLCSVVIESTNRLRFEILKGCRFLCVPWNFKKLKMYL 605
            D  + +V   +    T+++  +  +G R +CV WN ++++MYL
Sbjct: 943  DASNKYVKSELGSSKTDKVSADTSRGWRHICVTWN-QEVQMYL 984


>SB_6350| Best HMM Match : Acyl_transf_1 (HMM E-Value=0.87)
          Length = 721

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 633 HGTHKNLHPFKISNLNLLVLSITTEHKT 716
           HG H+ L  FKI N  L V +I T  +T
Sbjct: 446 HGPHRQLEAFKIFNTCLTVRTIATRLRT 473


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,024,108
Number of Sequences: 59808
Number of extensions: 450960
Number of successful extensions: 1019
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)