Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0092
         (793 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28350| Best HMM Match : BTB (HMM E-Value=1.1e-38)                   37   0.022
SB_49953| Best HMM Match : BTB (HMM E-Value=2.9e-18)                   32   0.46 
SB_54052| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_19151| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0)                     29   5.7  
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 
SB_33108| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 
SB_5804| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   10.0 

>SB_28350| Best HMM Match : BTB (HMM E-Value=1.1e-38)
          Length = 518

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +3

Query: 153 LQQRGEFVDMTLAADGHLVKVHRMVLCLVSPYIKPL 260
           L+  GE +D+TL   G  +K HR+VL   SPY + +
Sbjct: 32  LRDDGELLDVTLHVQGEEIKAHRVVLAACSPYFRAM 67


>SB_49953| Best HMM Match : BTB (HMM E-Value=2.9e-18)
          Length = 123

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 144 LTTLQQRGEFVDMTLAADGHLVKVHRMVLCLVSPYIKPL 260
           L  ++   E  D+TL A   ++  HR+VL  +SPY + L
Sbjct: 31  LNEMRTNSEHCDITLKAGNLVLSAHRVVLAALSPYFREL 69


>SB_54052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 120 YRSSICNGLTTLQQRGEFVDMTLAADGHLVKVHRMVLCLVSPYIKPL 260
           ++ SI + L +L++     D  +   G    VH+ VLC  SP+ + L
Sbjct: 17  FKLSILDRLNSLRKENVLCDAVIQIGGKTHPVHKNVLCAASPFFRGL 63


>SB_19151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
 Frame = +3

Query: 117 SYRSS-----ICNGLTTLQQRGEFVDMTLAA-DGHLVKVHRMVLCLVSPYIKPL 260
           SY+SS     +  GL +     E  D+TL   DG  + VHR VL  VSPY + +
Sbjct: 58  SYKSSANSHRVLQGLFSQIGLKELCDVTLETEDGLSIAVHRNVLAAVSPYFRAM 111


>SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 823

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 138 NGLTTLQQRGEFVDMTLAADGHLVKVHRMVLCLVSPYIKPL 260
           + L  L+Q  E  D+ +      +  HR+VL   SPY + +
Sbjct: 47  DSLEALRQCEELCDVVIKVGSSTIHAHRVVLAACSPYFRAM 87


>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 777 KRNSLFFTAEIGRVVVPNHADSQKVLPPV 691
           +   LFFT E  R+ VP H  +   L PV
Sbjct: 339 RSGDLFFTTEYERIPVPEHVTATHSLDPV 367


>SB_33108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 262 YKGLMYGLTRHSTMRCTFTKCPSAARV 182
           YK L+  L +H  +  T T+C   ARV
Sbjct: 27  YKNLITALVQHERIETTLTRCQDLARV 53


>SB_5804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 262 YKGLMYGLTRHSTMRCTFTKCPSAARV 182
           YK L+  L +H  +  T T+C   ARV
Sbjct: 27  YKNLITALVQHERIETTLTRCQDLARV 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,902,674
Number of Sequences: 59808
Number of extensions: 542863
Number of successful extensions: 1146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)