Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0083
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25395| Best HMM Match : CK_II_beta (HMM E-Value=0)                 163   1e-40
SB_3780| Best HMM Match : No HMM Matches (HMM E-Value=.)              116   2e-26
SB_44585| Best HMM Match : DeoC (HMM E-Value=3.7e-13)                  73   2e-13
SB_8367| Best HMM Match : SRP19 (HMM E-Value=1.1)                      33   0.18 
SB_52124| Best HMM Match : SRP19 (HMM E-Value=1.1)                     33   0.24 
SB_50008| Best HMM Match : SRP19 (HMM E-Value=4.6)                     33   0.24 
SB_29451| Best HMM Match : K_tetra (HMM E-Value=1.1)                   33   0.24 
SB_56211| Best HMM Match : SRP19 (HMM E-Value=0.51)                    31   0.99 
SB_45161| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_58164| Best HMM Match : zf-RNPHF (HMM E-Value=3)                    29   4.0  
SB_34712| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_22439| Best HMM Match : SRP19 (HMM E-Value=2.1)                     29   4.0  
SB_13687| Best HMM Match : SRP19 (HMM E-Value=3.3)                     29   4.0  
SB_1821| Best HMM Match : SRP19 (HMM E-Value=3.3)                      29   4.0  
SB_57984| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)                     28   9.2  

>SB_25395| Best HMM Match : CK_II_beta (HMM E-Value=0)
          Length = 408

 Score =  163 bits (396), Expect = 1e-40
 Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 5/88 (5%)
 Frame = +3

Query: 6   MSSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMILDLEP-- 179
           MSSSEEVSWI+WFC LRGNEFFCEVDEDYI DKFNLTGLNEQVPHYR+ALDMILD+EP  
Sbjct: 1   MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDMEPDD 60

Query: 180 ---DNPNESDLVEQASEILYGLIHARYI 254
              DNPN+SDL+EQA+E+LYGLIHARYI
Sbjct: 61  ELEDNPNQSDLIEQAAEMLYGLIHARYI 88



 Score =  111 bits (268), Expect = 4e-25
 Identities = 45/50 (90%), Positives = 48/50 (96%)
 Frame = +2

Query: 359 LSDVPAEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPD 508
           LSDVP EAMVKLYCP+CMD YTPKSSRHHHTDGAYFGTGFPHM+FMVHP+
Sbjct: 105 LSDVPGEAMVKLYCPKCMDAYTPKSSRHHHTDGAYFGTGFPHMLFMVHPE 154



 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 26/39 (66%), Positives = 32/39 (82%)
 Frame = +1

Query: 502 PR*RPKRPASQFVPRLYGFKIHPLAYQIQQAAANSKPPQ 618
           P  RPKRPA+ FVPRL+GFKIHP+A+QIQQ AA+ +  Q
Sbjct: 153 PEYRPKRPANHFVPRLFGFKIHPMAFQIQQQAASQRGSQ 191


>SB_3780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score =  116 bits (279), Expect = 2e-26
 Identities = 48/85 (56%), Positives = 62/85 (72%)
 Frame = +2

Query: 254 MTNRGISQMLDKFQSGDFGYCPRVYCECQPMLPIGLSDVPAEAMVKLYCPRCMDVYTPKS 433
           ++ RG  +ML K+  GDFG+CPRV C    +LPIGLSD   E MVK+YCP+C +VY P+ 
Sbjct: 114 LSERGCKKMLYKYLQGDFGHCPRVLCSNANVLPIGLSDQAGEEMVKIYCPKCNEVYEPRQ 173

Query: 434 SRHHHTDGAYFGTGFPHMVFMVHPD 508
            ++ + DGAYFGT  PHMVFMV+PD
Sbjct: 174 LKYCYIDGAYFGTSLPHMVFMVYPD 198



 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 14/89 (15%)
 Frame = +3

Query: 30  WIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMILD----LEPD----- 182
           WI  FCT  GN+FFCE++++Y+ D+ NL GL+E+V  + +AL +ILD     + D     
Sbjct: 25  WIHRFCTKLGNDFFCEIEKEYVRDQSNLVGLDEEVSCFSQALSVILDRTDKTDDDFVRFS 84

Query: 183 ----NPNESD-LVEQASEILYGLIHARYI 254
                PN  D  V +A+E LYGLIHARYI
Sbjct: 85  KISYQPNGMDKTVAKAAEHLYGLIHARYI 113



 Score = 33.5 bits (73), Expect = 0.18
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +1

Query: 502 PR*RPKRPASQFVPRLYGFKIHPLAYQIQQAAANSK 609
           P  RP   +  +VPRLYGFK+H  +Y  Q    N K
Sbjct: 197 PDYRPDITSEHYVPRLYGFKLHGTSYS-QNITENRK 231


>SB_44585| Best HMM Match : DeoC (HMM E-Value=3.7e-13)
          Length = 473

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 32/45 (71%), Positives = 36/45 (80%)
 Frame = +3

Query: 78  VDEDYINDKFNLTGLNEQVPHYREALDMILDLEPDNPNESDLVEQ 212
           VDEDYI DKFNLTGLNEQVPHYR+ALDMILD+EP        +E+
Sbjct: 1   VDEDYIQDKFNLTGLNEQVPHYRQALDMILDMEPGQTPLKQRIEE 45


>SB_8367| Best HMM Match : SRP19 (HMM E-Value=1.1)
          Length = 354

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
 Frame = +3

Query: 48  TLRGNEFFCEVDEDYIN--DKFNLTGLNEQVPHYREALDMILDLEPDNPNESDLV----E 209
           T+  N   CE  ED  N  D    TGL   VP YR+ +D +      NPNE  L+    +
Sbjct: 66  TVIHNSVPCEPREDLYNLLDAREATGLRISVPAYRKVVDELY----SNPNEGRLIVLCKD 121

Query: 210 QASEILYGL 236
           +++E+L G+
Sbjct: 122 KSTELLVGI 130


>SB_52124| Best HMM Match : SRP19 (HMM E-Value=1.1)
          Length = 621

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = +3

Query: 60  NEFFCEVDEDYIN--DKFNLTGLNEQVPHYREALDMILDLEPDNPNESDLV----EQASE 221
           N   CE  ED  N  D    TGL   VP YR+ +D +      NPNE  L+    ++++E
Sbjct: 4   NSVPCEPREDLYNLLDAREATGLRISVPAYRKVVDELY----SNPNEGRLIVLCKDKSTE 59

Query: 222 ILYGL 236
           +L G+
Sbjct: 60  LLVGI 64


>SB_50008| Best HMM Match : SRP19 (HMM E-Value=4.6)
          Length = 338

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = +3

Query: 60  NEFFCEVDEDYIN--DKFNLTGLNEQVPHYREALDMILDLEPDNPNESDLV----EQASE 221
           N   CE  ED  N  D    TGL   VP YR+ +D +      NPNE  L+    ++++E
Sbjct: 113 NSVPCEPREDLYNRLDAREATGLRISVPAYRKVVDELY----SNPNEGRLIVLCKDKSTE 168

Query: 222 ILYGL 236
           +L G+
Sbjct: 169 LLVGI 173


>SB_29451| Best HMM Match : K_tetra (HMM E-Value=1.1)
          Length = 607

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = +3

Query: 60  NEFFCEVDEDYIN--DKFNLTGLNEQVPHYREALDMILDLEPDNPNESDLV----EQASE 221
           N   CE  ED  N  D    TGL   VP YR+ +D +      NPNE  L+    ++++E
Sbjct: 4   NSVPCEPREDLYNRLDAREATGLRISVPAYRKVVDELY----SNPNEGRLIVLCKDKSTE 59

Query: 222 ILYGL 236
           +L G+
Sbjct: 60  LLVGI 64


>SB_56211| Best HMM Match : SRP19 (HMM E-Value=0.51)
          Length = 488

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
 Frame = +3

Query: 60  NEFFCEVDEDYIN--DKFNLTGLNEQVPHYREALDMILDLEPDNPNESDLV----EQASE 221
           N   CE   D  N  D    TGL   VP YR+ +D +      NPNE  L+    ++++E
Sbjct: 4   NSVPCEPKGDLYNLLDAREATGLRISVPAYRKVVDKLY----SNPNEGRLIVLCKDKSTE 59

Query: 222 ILYGL 236
           +L G+
Sbjct: 60  LLVGI 64


>SB_45161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 60  NEFFCEVDEDYIN--DKFNLTGLNEQVPHYREALDMILDLEPDNPNESDLV 206
           N   CE  ED  N  D    TGL   VP YR+ +D +      NPNE  L+
Sbjct: 20  NSVPCEPREDLYNLLDAREATGLRISVPAYRKVVDELY----SNPNEGRLI 66


>SB_58164| Best HMM Match : zf-RNPHF (HMM E-Value=3)
          Length = 522

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
 Frame = +3

Query: 75  EVDEDYIN--DKFNLTGLNEQVPHYREALDMILDLEPDNPNESDLV----EQASEILYGL 236
           E  ED  N  D    TGL   VP YR+ +D +      NPNE  L+    ++++E+L G+
Sbjct: 9   EPREDLYNLLDAREATGLRISVPAYRKVVDELY----SNPNEGRLIVLCKDKSTELLVGI 64


>SB_34712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
 Frame = +3

Query: 75  EVDEDYIN--DKFNLTGLNEQVPHYREALDMILDLEPDNPNESDLV----EQASEILYGL 236
           E  ED  N  D    TGL   VP YR+ +D +      NPNE  L+    ++++E+L G+
Sbjct: 9   EPREDLYNLLDAREATGLRISVPAYRKVVDELY----SNPNEGRLIVLCKDKSTELLVGI 64


>SB_22439| Best HMM Match : SRP19 (HMM E-Value=2.1)
          Length = 637

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
 Frame = +3

Query: 75  EVDEDYIN--DKFNLTGLNEQVPHYREALDMILDLEPDNPNESDLV----EQASEILYGL 236
           E  ED  N  D    TGL   VP YR+ +D +      NPNE  L+    ++++E+L G+
Sbjct: 25  EPREDLYNLLDAREATGLRISVPAYRKVVDELY----SNPNEGRLIVLCKDKSTELLVGI 80


>SB_13687| Best HMM Match : SRP19 (HMM E-Value=3.3)
          Length = 367

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
 Frame = +3

Query: 75  EVDEDYIN--DKFNLTGLNEQVPHYREALDMILDLEPDNPNESDLV----EQASEILYGL 236
           E  ED  N  D    TGL   VP YR+ +D +      NPNE  L+    ++++E+L G+
Sbjct: 9   EPREDLYNLLDAREATGLRISVPAYRKVVDELY----SNPNEGRLIVLCKDKSTELLVGI 64


>SB_1821| Best HMM Match : SRP19 (HMM E-Value=3.3)
          Length = 366

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
 Frame = +3

Query: 75  EVDEDYIN--DKFNLTGLNEQVPHYREALDMILDLEPDNPNESDLV----EQASEILYGL 236
           E  ED  N  D    TGL   VP YR+ +D +      NPNE  L+    ++++E+L G+
Sbjct: 9   EPREDLYNLLDAREATGLRISVPAYRKVVDELY----SNPNEGRLIVLCKDKSTELLVGI 64


>SB_57984| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 138 HYREALDMILDLEPDNPNESDLVEQ 212
           H+   LD +LDL  ++P E+DL+ Q
Sbjct: 13  HFEWVLDTLLDLHHNHPTENDLLTQ 37


>SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)
          Length = 1187

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 108 NLTGLNEQVPHYREALDMILDLEPDNPNESDLVEQASEILYG 233
           +L    +    YREA D+I D+    P+  D++ + +E++ G
Sbjct: 545 SLGSQGDPTEEYREAKDLIRDILNHKPDVVDVITKGNELIDG 586


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,364,208
Number of Sequences: 59808
Number of extensions: 573909
Number of successful extensions: 1475
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)