Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0081
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)             108   4e-24
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)                   34   0.13 
SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_16060| Best HMM Match : Protamine_P1 (HMM E-Value=7.8)              28   6.3  
SB_21713| Best HMM Match : ShTK (HMM E-Value=3.9e-05)                  28   8.4  
SB_41091| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
          Length = 600

 Score =  108 bits (260), Expect = 4e-24
 Identities = 48/78 (61%), Positives = 56/78 (71%)
 Frame = +1

Query: 22  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 201
           K NN+IPNGHFHKDWQR+VKTWF+QP R+ RR+  R               LRPIVRCPT
Sbjct: 4   KRNNIIPNGHFHKDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPT 63

Query: 202 VRYHTKVRAGRGFTLREI 255
            +Y+TKVRAGRGFTL E+
Sbjct: 64  FKYNTKVRAGRGFTLDEL 81



 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 41/78 (52%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
 Frame = +3

Query: 255 RAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANE 431
           +AAG+    A TIGIAVD RR+N+S ESLQ NVQR+KEY+++LI+FP K  K  +G++  
Sbjct: 82  KAAGIPRKVAPTIGIAVDHRRKNRSAESLQANVQRLKEYKSKLIVFPRKANKPKQGDSEA 141

Query: 432 EERKLATQLRGPLMPVQQ 485
            +   A QL+GP+MP+ Q
Sbjct: 142 ADLANAVQLQGPVMPIPQ 159


>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
          Length = 440

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +3

Query: 297 IAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQ 455
           IA+  R    + +     + RI+E R   ++F  GK V  G  +EE+ KLA +
Sbjct: 301 IALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSKLAAR 353


>SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1967

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/72 (27%), Positives = 35/72 (48%)
 Frame = +3

Query: 333  ESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVASL 512
            ESL++  ++IKE +A+L+     +++ + E   +E      LR  L         S   L
Sbjct: 1124 ESLEVANKKIKELQAQLL---TARELTQQECVSKEASEVANLRDALEKANSKVAHSEEIL 1180

Query: 513  SLKMKRTSKLIN 548
            +LK  R  +L+N
Sbjct: 1181 ALKAARLKELVN 1192


>SB_16060| Best HMM Match : Protamine_P1 (HMM E-Value=7.8)
          Length = 91

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = +3

Query: 282 ARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLAT 452
           AR I +A+  RR   +  S+Q   +   EY  R     KG+KV KG    +ERK A+
Sbjct: 17  ARRIRLAIFSRRLKFARTSVQNRQRNQAEYSER-----KGRKVRKGRKVRKERKPAS 68


>SB_21713| Best HMM Match : ShTK (HMM E-Value=3.9e-05)
          Length = 378

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/76 (25%), Positives = 38/76 (50%)
 Frame = +3

Query: 315 RRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAP 494
           +RNK++ SL++ +QR K   +  +   + K +       +  K    LR   + +Q+   
Sbjct: 265 QRNKAIGSLRLKIQRNKAIGSLRLKIQRNKAIGSLRLKIQRNKAIGSLR---LKIQR--N 319

Query: 495 KSVASLSLKMKRTSKL 542
           K++ SL LK++R   +
Sbjct: 320 KAIGSLRLKIQRNKAI 335


>SB_41091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 340 NDSTDLLRLRGSTAIPIVRANTGFNPAALFHEE 242
           ND T L  L   T +P+V  N     AAL+ EE
Sbjct: 107 NDLTALTSLNEETGLPLVAVNPFHEVAALYDEE 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,224,516
Number of Sequences: 59808
Number of extensions: 392116
Number of successful extensions: 1069
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)