Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0080
(754 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 143 2e-34
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 4e-23
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 7e-19
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 88 6e-18
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 84 1e-16
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 76 4e-14
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 3e-13
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 7e-12
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 64 9e-11
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 64 9e-11
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 63 2e-10
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 3e-10
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 62 6e-10
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 60 1e-09
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 60 1e-09
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 58 6e-09
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 56 2e-08
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 5e-08
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 53 2e-07
SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 53 2e-07
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 52 5e-07
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 46 4e-05
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 43 3e-04
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 42 4e-04
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6) 42 7e-04
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 41 0.001
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 39 0.004
SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 38 0.009
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.012
SB_53656| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 37 0.015
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 33 0.19
SB_55048| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 33 0.25
SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8) 32 0.43
SB_10109| Best HMM Match : PA (HMM E-Value=0.0067) 32 0.57
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 30 1.8
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 29 4.1
SB_33165| Best HMM Match : ABC_tran (HMM E-Value=0) 29 4.1
SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73) 28 7.1
SB_37862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 143 bits (346), Expect = 2e-34
Identities = 68/94 (72%), Positives = 77/94 (81%)
Frame = +1
Query: 265 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 444
+R+TC++GGAPK Q R+LERGVEI IATPGRLID LE TNL+RCTYLVLDEADRMLD
Sbjct: 161 LRSTCIYGGAPKGPQIRELERGVEICIATPGRLIDMLESRKTNLRRCTYLVLDEADRMLD 220
Query: 445 MGFEPQIRKIIEQIRPDRQTLSGQLLGPKK*RNL 546
MGFEPQIR II+QIRPDRQTL PK+ + L
Sbjct: 221 MGFEPQIRTIIDQIRPDRQTLMWSATWPKEVQGL 254
Score = 95.9 bits (228), Expect = 3e-20
Identities = 46/86 (53%), Positives = 61/86 (70%)
Frame = +3
Query: 492 RQTDFEWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 671
RQT WSATWPKEV+ LA D+L DY+ I +GSL L+ANH ILQIVD+C++HEKE+ +
Sbjct: 238 RQT-LMWSATWPKEVQGLAHDFLSDYVHITVGSLGLTANHKILQIVDVCEDHEKEHNVGS 296
Query: 672 LLQEIGQSQEPGAKTIIFVETKRKAE 749
+ G +T+IF ETKR+A+
Sbjct: 297 FIG--GIVILSSLQTLIFTETKRRAD 320
Score = 70.1 bits (164), Expect = 2e-12
Identities = 31/46 (67%), Positives = 37/46 (80%)
Frame = +2
Query: 122 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGPH 259
+ILP IVHIN+QP ++ GDGPI LVL PTRELAQQ+Q+VA G H
Sbjct: 113 FILPGIVHINHQPLLQPGDGPIVLVLCPTRELAQQVQEVAYSVGKH 158
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 105 bits (252), Expect = 4e-23
Identities = 58/116 (50%), Positives = 71/116 (61%), Gaps = 11/116 (9%)
Frame = +1
Query: 238 CCRFWTTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGT---TNLQRCT 408
C +F + +R CV+GG EQ +L+RG EI++ TPGR+ID L TN QRCT
Sbjct: 164 CKKFCKPNNLRCVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLTANNGRVTNCQRCT 223
Query: 409 YLVLDEADRMLDMGFEPQIRK--------IIEQIRPDRQTLSGQLLGPKK*RNLLR 552
YLVLDEADRM DMGFEPQI K II+ IRPDRQT+ P++ L R
Sbjct: 224 YLVLDEADRMFDMGFEPQITKIRYPKVMRIIDCIRPDRQTVMFSATFPRQMEALAR 279
Score = 36.7 bits (81), Expect = 0.020
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGV 92
+K Y++PTPIQAQ P+ MSG++++ +
Sbjct: 120 LKKNSYEKPTPIQAQAIPVIMSGRDMIAI 148
Score = 31.5 bits (68), Expect = 0.76
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +2
Query: 110 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 250
K +Y P + P I G IA+V+ PTRELA QI + F
Sbjct: 121 KKNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELAIQIHRECKKF 167
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 91.5 bits (217), Expect = 7e-19
Identities = 49/102 (48%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Frame = +1
Query: 259 SYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRM 438
S R V+GGA Q R+L+R +++ATPGRL+D +++G L +LVLDEADRM
Sbjct: 952 SLCRPCVVYGGADIGSQLRELDRNCHLLVATPGRLVDMMDRGRVGLDSIRFLVLDEADRM 1011
Query: 439 LDMGFEPQIRKIIEQ-IRPD---RQTLSGQLLGPKK*RNLLR 552
LDMGFEPQIR+I++Q P RQTL PK+ + L R
Sbjct: 1012 LDMGFEPQIRRIVDQDSMPKTGIRQTLMFSATFPKEIQMLAR 1053
Score = 52.0 bits (119), Expect = 5e-07
Identities = 35/86 (40%), Positives = 51/86 (59%)
Frame = +3
Query: 492 RQTDFEWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 671
RQT +SAT+PKE++ LA D+L +YI + +G + S + NI Q V E +K + L
Sbjct: 1035 RQT-LMFSATFPKEIQMLARDFLENYIFLAVGKVG-STSENITQKVVWVDEFDKRSFLLD 1092
Query: 672 LLQEIGQSQEPGAKTIIFVETKRKAE 749
LL G P T++FVETK+ A+
Sbjct: 1093 LLNASG----PQQLTLVFVETKKGAD 1114
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 18 GYKEPTPIQAQGWPIAMSGKNLVGVAK 98
GYK+PTP+Q PI ++L+ A+
Sbjct: 894 GYKKPTPVQKYAIPIVKGKRDLMACAQ 920
Score = 28.7 bits (61), Expect = 5.4
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT-----RELAQQIQQVAADFGP 256
+QTGSGKT A+++P + I + P D + P ++ Q++++ D
Sbjct: 919 AQTGSGKTAAFLIPILSRIYMEGPPAPPDFSYRSLCRPCVVYGGADIGSQLREL--DRNC 976
Query: 257 HLMFVTRVCLVVLLKESKPG 316
HL+ T LV ++ + G
Sbjct: 977 HLLVATPGRLVDMMDRGRVG 996
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 88.2 bits (209), Expect = 6e-18
Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 4/105 (3%)
Frame = +1
Query: 244 RFWTTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLD 423
+F + +R +GG Q R L+ G +++ TPGRL DF+EKG +L+ +L+LD
Sbjct: 810 KFAHGTMLRPVVCYGGVSVSHQLRQLQSGCNLLVGTPGRLTDFIEKGKVSLKGLQFLILD 869
Query: 424 EADRMLDMGFEPQIRKIIEQI----RPDRQTLSGQLLGPKK*RNL 546
EADRMLDMGFEP IR+I+E + + +RQTL P++ + L
Sbjct: 870 EADRMLDMGFEPAIRRIVESMGMPDKSERQTLMFSATFPEEIQRL 914
Score = 52.0 bits (119), Expect = 5e-07
Identities = 30/86 (34%), Positives = 53/86 (61%)
Frame = +3
Query: 492 RQTDFEWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 671
RQT +SAT+P+E+++LA D+L DY+ + +G + +I Q V ++EK ++L
Sbjct: 898 RQT-LMFSATFPEEIQRLAGDFLNDYLFLTVGRVG-GTTSDIEQTVIEVTDNEKRDRLTQ 955
Query: 672 LLQEIGQSQEPGAKTIIFVETKRKAE 749
+L + G +T++FVE+KR A+
Sbjct: 956 ILGDAGTD-----RTLVFVESKRSAD 976
Score = 44.4 bits (100), Expect = 1e-04
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINN----QPPIRRGDGPIALVLAPTRELAQQIQQVAADFGPH 259
+QTGSGKT A++LP + + N P A+ +APTRELA QI A F
Sbjct: 755 AQTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLEARKFAHG 814
Query: 260 LMFVTRVC 283
M VC
Sbjct: 815 TMLRPVVC 822
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
V+ YK+PTP+Q PI ++G++++ A+
Sbjct: 726 VRKAQYKKPTPVQKYSIPIVIAGRDVMACAQ 756
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 83.8 bits (198), Expect = 1e-16
Identities = 40/70 (57%), Positives = 47/70 (67%)
Frame = +1
Query: 244 RFWTTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLD 423
RF + VFGG K EQ++ L+ G EIV+ATPGRLID ++ TNL R TYLV D
Sbjct: 612 RFGKAYNIHVVAVFGGGNKYEQSKALQEGAEIVVATPGRLIDHVKAKATNLHRVTYLVFD 671
Query: 424 EADRMLDMGF 453
EADRM DMGF
Sbjct: 672 EADRMFDMGF 681
Score = 70.9 bits (166), Expect = 1e-12
Identities = 32/54 (59%), Positives = 41/54 (75%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 253
++TGSGKT A++ PA+VHI +QP ++ GDGPI L+ APTREL QQI A FG
Sbjct: 561 AKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPTRELCQQIYTEARRFG 614
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK----RVPAKRWP 122
++ + Y +PT IQ Q PIA+SG++++G+AK + A WP
Sbjct: 532 IRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWP 574
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 75.8 bits (178), Expect = 4e-14
Identities = 27/67 (40%), Positives = 47/67 (70%)
Frame = +1
Query: 277 CVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 456
C++GG P Q + G+++++ TPGR++DF+ +GT +L + ++VLDE DRMLDMGF
Sbjct: 178 CIYGGMPYEPQENAINSGLDVLVGTPGRILDFMRQGTLDLSKLKHVVLDEVDRMLDMGFA 237
Query: 457 PQIRKII 477
+ +++
Sbjct: 238 ESVEEVL 244
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +2
Query: 8 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINN-QPPIRRGDGP 184
+D G+ +S Y ++ +++TG+GKTL++ LP + + + + +RG P
Sbjct: 89 EDRGITYLFPIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAP 148
Query: 185 IALVLAPTRELAQQI 229
LV+APTRELA+Q+
Sbjct: 149 KVLVMAPTRELAKQV 163
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 72.5 bits (170), Expect = 3e-13
Identities = 39/82 (47%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
Frame = +1
Query: 277 CV-FGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGF 453
CV +GG QA LERG ++ TPGRL DF+ + L +L+LDEADRMLD+GF
Sbjct: 584 CVCYGGVSVPYQASQLERGCHFLVGTPGRLQDFVSREKIYLGSIQHLILDEADRMLDLGF 643
Query: 454 EPQIRKIIEQ----IRPDRQTL 507
P I K+IE+ + RQTL
Sbjct: 644 GPDIHKLIEESNMTAKESRQTL 665
Score = 54.0 bits (124), Expect = 1e-07
Identities = 29/64 (45%), Positives = 36/64 (56%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGPHLMFV 271
+QTGSGKT AY+LP + + Q P+AL +APTRELA+QI A F H
Sbjct: 523 AQTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKFSDHTPIK 582
Query: 272 TRVC 283
VC
Sbjct: 583 VCVC 586
Score = 33.9 bits (74), Expect = 0.14
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
+ GY+ PTP+Q PI M+G++L+ A+
Sbjct: 494 ISRAGYRRPTPVQKAALPIVMAGRDLMACAQ 524
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 68.1 bits (159), Expect = 7e-12
Identities = 33/77 (42%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Frame = +1
Query: 280 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL-QRCTYLVLDEADRMLDMGFE 456
+ GG ++ +A L++GV ++IATPGRL+D L+ L + LV+DEADR+L++GFE
Sbjct: 678 IMGGVNRKAEAERLQKGVNLLIATPGRLLDHLQNTQGFLYKNLQCLVIDEADRILEIGFE 737
Query: 457 PQIRKIIEQIRPDRQTL 507
++R+II + RQT+
Sbjct: 738 EEMRQIIRILPSKRQTV 754
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/87 (29%), Positives = 44/87 (50%)
Frame = +2
Query: 8 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 187
KD G +A ++ ++TGSGKTLA+++P +V + + + +G
Sbjct: 588 KDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVP-VVELLYKLQFKTRNGTG 646
Query: 188 ALVLAPTRELAQQIQQVAADFGPHLMF 268
++++PTREL+ Q VA D H F
Sbjct: 647 VIIISPTRELSLQTYGVARDLLKHHNF 673
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 64.5 bits (150), Expect = 9e-11
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +1
Query: 265 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEK-GTTNLQRCTYLVLDEADRML 441
++ + GG +QA L +VIATPGRL D ++ T NL++ +LVLDEADR+L
Sbjct: 104 LKEAVIVGGLDMMKQALSLANKPHVVIATPGRLADHIKSTDTLNLKKIQFLVLDEADRLL 163
Query: 442 DMGFEPQIRKIIEQIRPDRQTL 507
D F ++ I + + RQTL
Sbjct: 164 DPSFGDDLKVIFDAVPEKRQTL 185
Score = 37.9 bits (84), Expect = 0.009
Identities = 22/46 (47%), Positives = 29/46 (63%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 229
++TGSGKT A+ LP + + + P G A+VL PTRELA QI
Sbjct: 51 AKTGSGKTAAFALPILQKLCDDP-----YGIFAVVLTPTRELAFQI 91
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 64.5 bits (150), Expect = 9e-11
Identities = 34/74 (45%), Positives = 44/74 (59%)
Frame = +1
Query: 256 TSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADR 435
T+ + V GG P Q L G ++V+ATPGRL+D L + TYLV+DE DR
Sbjct: 193 TARYKAVAVCGGVPVSTQTIALREGADVVVATPGRLLD--------LYKITYLVMDEPDR 244
Query: 436 MLDMGFEPQIRKII 477
ML MG E Q+RKI+
Sbjct: 245 MLGMGMEEQLRKIV 258
Score = 57.2 bits (132), Expect = 1e-08
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 229
++TGSGKTLAY LP + + + P GD P+AL+L PTREL QQ+
Sbjct: 116 AETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTRELMQQV 161
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3
Query: 21 YKEPTPIQAQGWPIAMSGKNLVGVAKRVPAKRWPTSCQPLC 143
++ PTPIQ Q MSG++++G+A+ K S PLC
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSL-PLC 131
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 63.3 bits (147), Expect = 2e-10
Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 10/140 (7%)
Frame = +1
Query: 178 WSDCFGLGAYQRVSTTNSASCCRFWTTSYVRNT------CVFGGAP-KREQARDLERGVE 336
W+ GLGA +S T + F + N + GG K EQ R ++
Sbjct: 117 WTSMDGLGALV-ISPTRELAYQTFEVLVKIGNKHDLSAGLIIGGKDLKNEQKRIMK--TN 173
Query: 337 IVIATPGRLIDFLEKGTTNLQRCT---YLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTL 507
IV+ TPGRL+ +++ T N CT LVLDEADR+LDMGF P + IIE + +RQTL
Sbjct: 174 IVVCTPGRLLQHMDE-TPNFD-CTSLQILVLDEADRILDMGFAPTLNAIIENLPSERQTL 231
Query: 508 SGQLLGPKK*RNLLRITWET 567
+ ++L R++ ++
Sbjct: 232 LYSATQTRSVKDLARLSLQS 251
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/54 (46%), Positives = 34/54 (62%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 253
++TGSGKTLA+++P I + Q DG ALV++PTRELA Q +V G
Sbjct: 94 AKTGSGKTLAFLIPIIETLWRQKWTSM-DGLGALVISPTRELAYQTFEVLVKIG 146
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3
Query: 3 GVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
G+ G+ PT IQ QG P+A+SG++++G AK
Sbjct: 64 GLMKAGFVTPTDIQKQGIPVALSGRDVLGAAK 95
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 62.9 bits (146), Expect = 3e-10
Identities = 29/72 (40%), Positives = 41/72 (56%)
Frame = +1
Query: 271 NTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 450
+ C+ GG RE LE GV +V+ TPGR+ D + +G N + VLDEAD ML G
Sbjct: 191 HACI-GGTNVREDRMKLEEGVHVVVGTPGRVFDMINRGVLNTRDIKLFVLDEADEMLSRG 249
Query: 451 FEPQIRKIIEQI 486
F+ QI + ++
Sbjct: 250 FKDQIYDVFTRL 261
Score = 48.0 bits (109), Expect = 8e-06
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = +2
Query: 89 RSQTGSGKTLAYILPAIVHINNQPPIRRG-DGPIALVLAPTRELAQQIQQVAADFGPHLM 265
++Q+G+GKT + + + I+ + G D ALVLAPTRELAQQIQ+V G ++
Sbjct: 128 QAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQQIQKVVLALGDYMH 187
Query: 266 FVTRVCL 286
C+
Sbjct: 188 VKCHACI 194
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 61.7 bits (143), Expect = 6e-10
Identities = 24/62 (38%), Positives = 43/62 (69%)
Frame = +1
Query: 322 ERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 501
E GV++++ATPGR+++ + + +L V+DE D ML +GFE Q+++I+E++ RQ
Sbjct: 253 EMGVQVIVATPGRMVEIISRQAVDLTHVIGCVVDEVDTMLQLGFEQQVQQILERLSNRRQ 312
Query: 502 TL 507
T+
Sbjct: 313 TM 314
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 18 GYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAKRWPTS 128
GY PTPIQ Q P+ +SG++++ A K P+S
Sbjct: 215 GYHSPTPIQMQVLPVLLSGRDVMVCASTGSGKLLPSS 251
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 60.5 bits (140), Expect = 1e-09
Identities = 23/59 (38%), Positives = 42/59 (71%)
Frame = +1
Query: 331 VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTL 507
V +++ATPGR++D ++K ++ +C LV+DEAD++L M F+ + +II+ + +RQ L
Sbjct: 173 VHVIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIKHLPENRQIL 231
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = +2
Query: 89 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGPHL 262
R++ G+GKT AY++P + + + ALVL PTRELA Q Q+ + G H+
Sbjct: 90 RAKNGTGKTAAYLVPLLERTDTTKNCIQ-----ALVLVPTRELALQTSQICIELGKHM 142
Score = 32.7 bits (71), Expect = 0.33
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +3
Query: 3 GVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAK 113
G+ G+ +P+PIQ + P+A++G++++ AK K
Sbjct: 61 GIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 60.5 bits (140), Expect = 1e-09
Identities = 23/59 (38%), Positives = 42/59 (71%)
Frame = +1
Query: 331 VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTL 507
V +++ATPGR++D ++K ++ +C LV+DEAD++L M F+ + +II+ + +RQ L
Sbjct: 173 VHVIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIKHLPENRQIL 231
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = +2
Query: 89 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGPHL 262
R++ G+GKT AY++P + + + ALVL PTRELA Q Q+ + G H+
Sbjct: 90 RAKNGTGKTAAYLVPLLERTDTTKNCIQ-----ALVLVPTRELALQTSQICIELGKHM 142
Score = 32.7 bits (71), Expect = 0.33
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +3
Query: 3 GVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAK 113
G+ G+ +P+PIQ + P+A++G++++ AK K
Sbjct: 61 GIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 58.4 bits (135), Expect = 6e-09
Identities = 30/58 (51%), Positives = 39/58 (67%), Gaps = 4/58 (6%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGD----GPIALVLAPTRELAQQIQQVAADFG 253
++TGSGKT A+ +P +V I P I R + GP AL+LAPTRELAQQI++ FG
Sbjct: 145 AETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIEEEILKFG 202
Score = 45.6 bits (103), Expect = 4e-05
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Frame = +1
Query: 289 GAPKREQARDLERGVEIVIATPGR-LIDFLEKGTTNLQRC----TYLVLDEADRMLDMGF 453
G PK E+ D ++G +I P R L +E+ R T V+ ADRM+DMGF
Sbjct: 165 GLPKIERDNDADQGPYALILAPTRELAQQIEEEILKFGRPLGIRTVSVIGGADRMIDMGF 224
Query: 454 EPQIRKIIEQI 486
EP+++KI+E +
Sbjct: 225 EPEVQKILEHL 235
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
V +GYK+PTPIQ Q PI + ++++GVA+
Sbjct: 116 VDKLGYKDPTPIQRQAIPIGLQNRDIIGVAE 146
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 56.4 bits (130), Expect = 2e-08
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Frame = +1
Query: 265 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRM 438
V+ + GG QA L + I+IATPGRLID LE KG +L+ YLV+DEADR+
Sbjct: 61 VKCAVIVGGIDMMSQALMLAKKPHIIIATPGRLIDHLENTKG-FSLRTLKYLVMDEADRI 119
Query: 439 LDMGFEPQ 462
L+M FE +
Sbjct: 120 LNMDFEKE 127
Score = 36.7 bits (81), Expect = 0.020
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 253
++TGSGKT A+ LP + + + P AL+L PTRELA QI + G
Sbjct: 8 AETGSGKTGAFALPILQALLDNP-----QRLFALILTPTRELAFQISEQCEALG 56
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 55.2 bits (127), Expect = 5e-08
Identities = 29/79 (36%), Positives = 41/79 (51%)
Frame = +1
Query: 271 NTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 450
+ C+ GG E R L+ G IV TPGR+ D + + + LVLDEAD ML+ G
Sbjct: 97 HACI-GGTNIGEDIRKLDYGQHIVSGTPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNKG 155
Query: 451 FEPQIRKIIEQIRPDRQTL 507
F+ QI + + P Q +
Sbjct: 156 FKEQIYDVYRYLPPATQVV 174
Score = 44.8 bits (101), Expect = 8e-05
Identities = 25/66 (37%), Positives = 39/66 (59%)
Frame = +2
Query: 89 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGPHLMF 268
++Q+G+GKT + + + I+ Q +R P ALVL+PTRELA QIQ+V G ++
Sbjct: 40 QAQSGTGKTATFSISVLQAIDTQ--LRE---PQALVLSPTRELANQIQKVVLALGDYMSV 94
Query: 269 VTRVCL 286
C+
Sbjct: 95 QCHACI 100
>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 445
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/54 (48%), Positives = 32/54 (59%)
Frame = +1
Query: 391 NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLSGQLLGPKK*RNLLR 552
N+ YLVLDEADRM+DMGFE +R I + RQTL PKK +N +
Sbjct: 13 NVSPYRYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKIQNFAK 66
>SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 212
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/54 (48%), Positives = 32/54 (59%)
Frame = +1
Query: 391 NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLSGQLLGPKK*RNLLR 552
N+ YLVLDEADRM+DMGFE +R I + RQTL PKK +N +
Sbjct: 13 NVSPYRYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKIQNFAK 66
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 52.0 bits (119), Expect = 5e-07
Identities = 25/73 (34%), Positives = 41/73 (56%)
Frame = +1
Query: 268 RNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDM 447
R+ + GG ++ DLE V++++ATPG L+ + +K T+LV+DEAD M D
Sbjct: 485 RSVGLIGGRKQKWMRDDLESPVDLLVATPGTLLKYRQKDRLFFSDLTHLVIDEADTMFDA 544
Query: 448 GFEPQIRKIIEQI 486
F+ +I+ I
Sbjct: 545 SFKSLTMEILHTI 557
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRG-----DGPIALVLAPTRELAQQIQQVAADFGP 256
+QTGSGKTLAY+ P +VH + R G P A ++ P RELA QI + A
Sbjct: 422 AQTGSGKTLAYLAP-LVHRLREDEERHGILARLKRPRACIVVPARELATQILKTAKSLCH 480
Query: 257 HLMF 268
H F
Sbjct: 481 HARF 484
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 45.6 bits (103), Expect = 4e-05
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Frame = +1
Query: 280 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEP 459
VF G E+ + + I + TPGR+ +E+ + +LDEAD++LD F+
Sbjct: 115 VFIGGISLEEDKKALKSCHIAVGTPGRVKYLIEQKYLKTESVRMFILDEADKLLDESFQQ 174
Query: 460 QIRKIIEQIRPDRQTLSGQLLGPKK*RN-LLRITWETTF 573
QI I + ++Q ++ P+ N L + E TF
Sbjct: 175 QINWIFSALPENKQMMAFSATYPEVLANHLKKYMTEPTF 213
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +2
Query: 89 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGPH 259
++++G+GKT + + A+ ++ I + ++L PTRE+A Q++ V G H
Sbjct: 56 QAKSGTGKTCVFSVIALENV-----ITESNCIQIIILTPTREIAVQVKDVICAIGCH 107
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +1
Query: 331 VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 486
V+IV TPG+L DF+ +L + + +LDEAD +L G I KI +I
Sbjct: 136 VDIVTGTPGKLNDFITTDKISLHQVKFFILDEADGLLAQGNNDLIMKIYNKI 187
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 259 SYVRNTCVFGGAPKREQARDLERGV-EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADR 435
S ++ FGG ++ + L+ IV+ TPGR++ + T NL+ + +LDE D+
Sbjct: 143 SNIKIAVFFGGINIKKDQQTLKTNCPHIVVGTPGRILALTREKTLNLKHAKHFILDECDK 202
Query: 436 MLD 444
ML+
Sbjct: 203 MLE 205
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 259 SYVRNTCVFGGAPKREQARDLERGV-EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADR 435
S ++ FGG ++ + L+ IV+ TPGR++ + T NL+ + +LDE D+
Sbjct: 143 SNIKIAVFFGGINIKKDQQTLKTNCPHIVVGTPGRILALTREKTLNLKHAKHFILDECDK 202
Query: 436 MLD 444
ML+
Sbjct: 203 MLE 205
>SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6)
Length = 127
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +1
Query: 412 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTL 507
LVLDEADRMLDMGF IR+++ ++ RQ L
Sbjct: 7 LVLDEADRMLDMGFIHDIRRVLTKLPAKRQNL 38
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/63 (33%), Positives = 37/63 (58%)
Frame = +1
Query: 280 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEP 459
+FGG + ++ L G E+++ATP + L++ T+L R ++V D+AD ML F
Sbjct: 298 IFGGGAEEDRIVPLINGCEVLVATPPCFLRMLKRCYTSLDRLCHVVFDDAD-MLAEYFTA 356
Query: 460 QIR 468
+I+
Sbjct: 357 EIK 359
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +2
Query: 101 GSGKTLAYILPAIVHINNQPPIRR---GDGPIALVLAPTRELAQQIQQVAAD 247
GSGK LAY+LP I I + +GP+ L+L + ++ V D
Sbjct: 234 GSGKRLAYLLPIIHQITESSVYQELPLANGPLVLILCTNWQNTARVYGVCED 285
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 15 MGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAKR 116
+G PT +Q WP + G+++ GVA KR
Sbjct: 205 LGVTVPTSLQKHMWPSLLRGRDVAGVAIEGSGKR 238
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +1
Query: 331 VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 486
V +V+ + EK +N+Q YLV+DEADRM++ G ++ I+E I
Sbjct: 316 VVVVVVVVDTSVTNQEKHVSNIQLLRYLVIDEADRMVEQGHYEELSSILELI 367
Score = 36.3 bits (80), Expect = 0.027
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 14/61 (22%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHIN-------NQPPI-------RRGDGPIALVLAPTRELAQQI 229
++TGSGKTLA+ +P I HI Q P +G +AL++APTRELA Q+
Sbjct: 175 AETGSGKTLAFGIPIIQHIEAYKKRKAEQSPSDKESDLESQGYPLLALIMAPTRELALQV 234
Query: 230 Q 232
+
Sbjct: 235 K 235
Score = 32.3 bits (70), Expect = 0.43
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 265 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTN 393
V+ + GG +Q R L++ EIV+ATPGRL + + + T+
Sbjct: 247 VKVAAIVGGMAAPKQQRLLKQRPEIVVATPGRLWELISQVFTH 289
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +2
Query: 89 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGPH 259
+SQ+G+GKT A++L + ++ P P + L+PT ELA+Q +VA G H
Sbjct: 148 QSQSGTGKTAAFVLTMLSRVDATKPY-----PQVICLSPTYELARQTGKVAEAMGKH 199
Score = 35.9 bits (79), Expect = 0.035
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +1
Query: 337 IVIATPGRLIDFLEKGTT-NLQRCTYLVLDEADRMLDM-GFEPQIRKIIEQIRPDRQTL 507
I+I TPG L+D++ K ++ + VLDEAD M+ + G + Q +I + + D Q L
Sbjct: 224 IIIGTPGTLLDWIRKSKCFEPRKVSVFVLDEADIMIALQGHQDQSIRIHKSLHKDCQVL 282
>SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 271 NTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG 384
+ C+ GG RE LE GV +V+ TPGR+ D + +G
Sbjct: 6 HACI-GGTNVREDRMKLEEGVHVVVGTPGRVFDMINRG 42
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 38.3 bits (85), Expect = 0.007
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 253
++TGSGKT A+++P + G AL+L+PTRELA Q Q+ + G
Sbjct: 325 ARTGSGKTAAFLIPMFEKLQTHTA---KVGIRALILSPTRELALQTQKFIKELG 375
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 328 GVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADR 435
G + V+ATPGR + + + L Y+V DEADR
Sbjct: 387 GGDSVVATPGRFLHVVMEMELKLSSVEYVVFDEADR 422
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 37.9 bits (84), Expect = 0.009
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = +2
Query: 2 RCKDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGDG 181
+ K G+ + L + K +S+TG+GK+L ++LP++ Q P RG G
Sbjct: 174 KLKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSV-----QDP-GRGYG 227
Query: 182 PIALVLAPTRELA-QQIQQVAADFGPHLMFVTRVCLVVLLKESK 310
I ++ PTRELA Q + +V+ G + + V V L ++ K
Sbjct: 228 TI--IVVPTRELASQMLYEVSRLLGDKSIVASFVSGVDLSRQEK 269
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 337 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRML 441
IVI TP RL + +++ QR +V+DE D+ L
Sbjct: 280 IVIGTPKRLWEIVQEHEHLFQRTKRIVIDEVDKTL 314
>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +1
Query: 445 MGFEPQIRKIIEQIRPDRQTL 507
MGFEP+I+KI+ IRPDRQT+
Sbjct: 1 MGFEPEIKKILLDIRPDRQTV 21
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +3
Query: 513 SATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEK 653
SATWP V+++A+ Y+ D +++ +G L L N+++ ++ EK
Sbjct: 24 SATWPPGVQRMADQYMTDPVRVFVGCLDL----NVIEFIEGMAPGEK 66
>SB_53656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 51
Score = 37.1 bits (82), Expect = 0.015
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +1
Query: 376 EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 486
E+ +N+Q YLV+DEADRM++ G ++ I+E I
Sbjct: 2 EEHVSNVQLLRYLVIDEADRMVEQGHYEELSSILELI 38
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 37.1 bits (82), Expect = 0.015
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +2
Query: 182 PIALVLAPTRELAQQIQQVAADFGPHLMFVTRVCL 286
P ALVL+PTRELA QIQ+V G ++ C+
Sbjct: 4 PQALVLSPTRELANQIQKVVLALGDYMSVQCHACI 38
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 33.5 bits (73), Expect = 0.19
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Frame = +1
Query: 334 EIVIATPGRLIDFL--EKGTTNLQRCTYLVLDEADRMLDM---GFEPQIRKIIEQI-RPD 495
+I++ TP RL+ L E L +L+LDEAD++ + GF QI I + +PD
Sbjct: 258 DILVTTPNRLVHLLTQEPPGIELHNVEWLILDEADKLFEEGKDGFREQIATIYQACNKPD 317
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 122 YILPAIVHINNQPPIRRG---DGPIALVLAPTRELAQQI 229
Y P + + P + G G A+V++PTRELAQQI
Sbjct: 183 YTTPTPIQMQATPLMAHGPKKSGFRAVVVSPTRELAQQI 221
>SB_55048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 27
Score = 33.1 bits (72), Expect = 0.25
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +1
Query: 316 DLERGVEIVIATPGRLIDFL 375
+L+RG EI++ TPGR+ID L
Sbjct: 3 ELKRGAEIIVCTPGRMIDML 22
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +2
Query: 98 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 226
TG+GKT A++LP + + +P + LV+ PTRELA Q
Sbjct: 56 TGTGKTAAFMLPILERLLYRP--TQSPAIRVLVITPTRELAIQ 96
Score = 31.9 bits (69), Expect = 0.57
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 95
V +G+ PTPIQA P+A+ GK++ A
Sbjct: 25 VNELGFLHPTPIQASTIPVALMGKDVCACA 54
>SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8)
Length = 210
Score = 32.3 bits (70), Expect = 0.43
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 412 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 501
LVLDEAD ML+ GF+ QI + + P Q
Sbjct: 39 LVLDEADEMLNKGFKEQIYDVYRYLPPATQ 68
>SB_10109| Best HMM Match : PA (HMM E-Value=0.0067)
Length = 354
Score = 31.9 bits (69), Expect = 0.57
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 215 LAQQIQQVAADFGPHLMFVTRVCLVVLL 298
L + Q+ + DF P+L+ T+VCLVVLL
Sbjct: 29 LLHKKQEKSHDFKPYLILATKVCLVVLL 56
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
V+ YK+PTP+Q PI ++G++++ A+
Sbjct: 149 VRKAQYKKPTPVQKYSIPIVIAGRDVMACAQ 179
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 29.1 bits (62), Expect = 4.1
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +1
Query: 349 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI-RPDRQTLSGQLLG 525
T R+++ LEK +T L YLV D + ML + F K + Q P Q LS G
Sbjct: 1411 TAKRILEALEKMSTPLIEEKYLVSDTSRIMLKLHFICSFVKYVAQFGAPPVQPLS----G 1466
Query: 526 PKK*RNLLRITWETT 570
P++ ++ R+T TT
Sbjct: 1467 PQR-ASISRVTPRTT 1480
>SB_33165| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1310
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 394 LQRCTYLVLDEADRMLDMGFEPQIRKII 477
LQRC LVLDEA +D + Q++++I
Sbjct: 1219 LQRCKVLVLDEATANVDYRTDRQVQQLI 1246
>SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1075
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 394 LQRCTYLVLDEADRMLDMGFEPQIRKII 477
LQRC LVLDEA +D + Q++++I
Sbjct: 984 LQRCKVLVLDEATANVDYRTDRQVQQLI 1011
>SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73)
Length = 895
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 358 RLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 489
R + LEKG + LDEAD+M+D F R+++E I+
Sbjct: 372 RQLRHLEKGKETCDQ----KLDEADKMIDAYFREMQRRLMEDIK 411
>SB_37862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 88
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -3
Query: 548 SKFLHFFGPSS*PLKVCLSGRICSMIFL-ICGSNPISNIRSASSRTKYVHR 399
S FLHF PS+ +C R C++ G+ S I+++SSR +Y+ R
Sbjct: 38 SYFLHFL-PSTIEFTIC-DNRSCALSNRGALGTRHCSEIQTSSSRRRYIGR 86
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,033,016
Number of Sequences: 59808
Number of extensions: 549103
Number of successful extensions: 1374
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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