Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0079
         (761 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28172| Best HMM Match : Ank (HMM E-Value=1.7e-37)                   29   4.1  
SB_55699| Best HMM Match : Ank (HMM E-Value=7.9e-35)                   29   5.5  
SB_54060| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_17257| Best HMM Match : rve (HMM E-Value=8.3e-08)                   28   7.2  

>SB_28172| Best HMM Match : Ank (HMM E-Value=1.7e-37)
          Length = 291

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 395 INFAHSNIFKLTKCNYHYINHVALLYYTISKMCHNSY 505
           I+F  S + +  KC+  +  HV+ + Y  +  C ++Y
Sbjct: 213 IHFMQSKLNRFVKCSIRFFRHVSTIQYIPTTSCCSTY 249


>SB_55699| Best HMM Match : Ank (HMM E-Value=7.9e-35)
          Length = 412

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
 Frame = +2

Query: 215 RLPCYKGGIAVFFLRPAS-HFFAMTKFLKVSFG*FIDDILSETRFRSLYCQNDNEE*SFS 391
           R   Y   +   F  P S ++F M  F  +S       +L E R R   C   N+E + +
Sbjct: 319 RKQLYNSSVLCHFEVPDSGNYFIMKSFYDLSKW-----LLVEMRARVRRCSQSNQEFALA 373

Query: 392 KINFAHSNIFKLTKC---NYHYI 451
             NF+H NI K   C   NY ++
Sbjct: 374 VTNFSH-NIGKKEVCEMMNYQFV 395


>SB_54060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 353 LYCQNDNEE*SFSKINFAHSNIFKLTKCNYHYINHVALLYYTISKMCHNSYSM 511
           ++C   + E + + I+F + +IFKLTK  +    H     Y   K  HN  SM
Sbjct: 38  IHCNQHSSEVTLASIDFINFDIFKLTKVIFEVRVHAEESEY---KKVHNYSSM 87


>SB_17257| Best HMM Match : rve (HMM E-Value=8.3e-08)
          Length = 962

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 332 SETRFRSLYCQNDNEE*SFSKINFAHSNIFKLTKCNYHYINHVALLYYTISKMCHN 499
           SE   R L+     E   ++K N + S  +++T C Y   +H A       K+C N
Sbjct: 226 SEMAVRQLHKMKPTETVHYTKQNKSKSKPWQITDCKYCGDSHAAGKCKAFGKVCSN 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,436,318
Number of Sequences: 59808
Number of extensions: 425933
Number of successful extensions: 811
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)