Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0071
(799 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0) 120 1e-27
SB_42121| Best HMM Match : EGF_CA (HMM E-Value=8.7) 44 1e-04
SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0) 31 1.1
SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0) 31 1.1
SB_12261| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76) 30 2.5
SB_44412| Best HMM Match : DUF1070 (HMM E-Value=0.76) 30 2.5
SB_52772| Best HMM Match : rve (HMM E-Value=0.001) 29 4.4
SB_11417| Best HMM Match : zf-TAZ (HMM E-Value=0.91) 29 5.8
>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
Length = 268
Score = 120 bits (289), Expect = 1e-27
Identities = 46/94 (48%), Positives = 72/94 (76%)
Frame = +3
Query: 510 ETDADPHNATRGFFFSHIGWLLLRKHPEIKAKGHTVDVNDLRNDPILRFQKKYYQILMPL 689
ETDADPHNA RGFFFSH+GWL+ RKHP++ KG +D++DL D ++ FQ+++Y+ + L
Sbjct: 70 ETDADPHNAKRGFFFSHVGWLMQRKHPDVIRKGKGIDLSDLYADSVVMFQRRHYKKISML 129
Query: 690 ACFIMPTYVPTLWGETVWNSFYVCEFSATYMFSI 791
C ++PT VP+LWGE++WN+++ F+ Y+ ++
Sbjct: 130 MCVLIPTLVPSLWGESLWNAYFT-SFALRYVITL 162
Score = 50.4 bits (115), Expect = 2e-06
Identities = 17/38 (44%), Positives = 30/38 (78%)
Frame = +1
Query: 394 QVLKARLPLRILLTIFNTIAFQDAVVDWARDHRMHHKY 507
+ KA+ PLR+++ + N++A Q+ + +W+RDHR+HHKY
Sbjct: 31 RTFKAKWPLRLVIMLMNSMAAQNDIFEWSRDHRVHHKY 68
Score = 38.7 bits (86), Expect = 0.005
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2
Query: 338 LYLCSGLGITAGAHRLWAHKS*K 406
L LC G G+T GAHRLWAH++ K
Sbjct: 12 LSLCRGYGVTIGAHRLWAHRTFK 34
>SB_42121| Best HMM Match : EGF_CA (HMM E-Value=8.7)
Length = 202
Score = 44.4 bits (100), Expect = 1e-04
Identities = 15/42 (35%), Positives = 30/42 (71%)
Frame = +3
Query: 666 YYQILMPLACFIMPTYVPTLWGETVWNSFYVCEFSATYMFSI 791
+Y+ + L C ++PT VP+LWGE++WN+++ F+ Y+ ++
Sbjct: 2 HYKKISMLMCVLIPTLVPSLWGESLWNAYFT-SFALRYVITL 42
>SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)
Length = 1075
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 601 ALISGCFLNNNQPMWEKKNPRVALWGSASVSNICG 497
A++ G F N P WE+ +P L + ++ ICG
Sbjct: 548 AIVHGRFSTNTFPSWERAHPNRYLAHNGEINTICG 582
>SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 1252
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 627 DLRNDPILRFQKKYYQILMPL--ACFIMPTYVPTLWGETVWNSFYV 758
D+ N PILR+ +Y + P+ ++ P + TL G WN + +
Sbjct: 407 DMPNGPILRYHVTFYDVQTPVQGGTYLAPGTLYTLTGLGPWNEYAI 452
>SB_12261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 629 IIH-VDGMAFGFDFGMLPQQQPANVGKEESSGCVVG 525
++H V G FG DF PAN G E S C VG
Sbjct: 339 VVHGVRGGVFGEDFAQHLAPNPANTGDEASYDCGVG 374
>SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76)
Length = 544
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 629 IIH-VDGMAFGFDFGMLPQQQPANVGKEESSGCVVG 525
++H V G FG DF PAN G E S C VG
Sbjct: 305 VVHGVRGGVFGEDFAQHLAPNPANTGDEASYDCGVG 340
>SB_44412| Best HMM Match : DUF1070 (HMM E-Value=0.76)
Length = 632
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 629 IIH-VDGMAFGFDFGMLPQQQPANVGKEESSGCVVG 525
++H V G FG DF PAN G E S C VG
Sbjct: 541 VVHGVRGGVFGEDFAQHLAPNPANTGDEASYDCGVG 576
>SB_52772| Best HMM Match : rve (HMM E-Value=0.001)
Length = 646
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 567 SQCGKRRILGLRCGGPHRSLIFVVHAMITGPIHYGIL 457
+ CGK +++ R GP R +I +++ IT P I+
Sbjct: 195 TSCGKTQLVVDRLVGPFRGIIIIINYSITKPFRENIV 231
>SB_11417| Best HMM Match : zf-TAZ (HMM E-Value=0.91)
Length = 390
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -3
Query: 620 VDGMAFGFDFGMLPQQQPANVGKEESSGCVVG 525
V G FG DF PAN G E S C VG
Sbjct: 155 VRGGVFGEDFAQHLAPNPANTGDEASYDCGVG 186
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,481,017
Number of Sequences: 59808
Number of extensions: 685170
Number of successful extensions: 1739
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1739
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -