Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0065
(759 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26678| Best HMM Match : I-set (HMM E-Value=1e-07) 33 0.33
SB_23339| Best HMM Match : I-set (HMM E-Value=1.3e-07) 33 0.33
SB_8869| Best HMM Match : Keratin_B2 (HMM E-Value=0.35) 33 0.33
SB_38551| Best HMM Match : Peptidase_S8 (HMM E-Value=0) 31 0.77
SB_45460| Best HMM Match : Keratin_B2 (HMM E-Value=0.11) 31 0.77
SB_37549| Best HMM Match : Keratin_B2 (HMM E-Value=1.1) 31 1.0
SB_29040| Best HMM Match : Keratin_B2 (HMM E-Value=0.44) 31 1.0
SB_1365| Best HMM Match : Keratin_B2 (HMM E-Value=0.35) 31 1.0
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_46993| Best HMM Match : Toxin_23 (HMM E-Value=2.3) 29 3.1
SB_51323| Best HMM Match : LicD (HMM E-Value=0.0088) 29 5.4
SB_27318| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_10630| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_41355| Best HMM Match : Rho_N (HMM E-Value=0.0007) 28 9.5
SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23) 28 9.5
SB_15820| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_56692| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1e-04) 28 9.5
>SB_26678| Best HMM Match : I-set (HMM E-Value=1e-07)
Length = 563
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = +3
Query: 177 YYPYVNMAVPATAFKDSVQKFMISKDRTAFKIWKIKEKSFNRNGDCCRTGPKYKLKQCLY 356
YY + PA ++I K T + F+ NGDCC + K ++++C+
Sbjct: 296 YYQLLASCAPANRCNAVATGWLIGKHPTTADGVVTRTVCFHSNGDCCHSSVKVQVRKCVN 355
Query: 357 PISY 368
Y
Sbjct: 356 QYVY 359
>SB_23339| Best HMM Match : I-set (HMM E-Value=1.3e-07)
Length = 423
Score = 32.7 bits (71), Expect = 0.33
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +3
Query: 294 FNRNGDCCRTGPKYKLKQCL 353
F+RNGDCCR+ K ++++C+
Sbjct: 290 FHRNGDCCRSSVKVQVRKCV 309
>SB_8869| Best HMM Match : Keratin_B2 (HMM E-Value=0.35)
Length = 674
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 276 KIKEKSFNRNGDCCRTGPKYKLKQ-CLYPI 362
++ + F RN CCR P +LKQ C YPI
Sbjct: 217 RVVPRRFGRNTSCCRYTPYNRLKQICCYPI 246
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 276 KIKEKSFNRNGDCCRTGPKYKLKQ-CLYP 359
++ + F RN CCR P +LKQ C YP
Sbjct: 101 RVVPRRFGRNTSCCRYTPYNRLKQICCYP 129
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 276 KIKEKSFNRNGDCCRTGPKYKLKQ-CLYP 359
++ + F RN CCR P +LKQ C YP
Sbjct: 507 RVVPRRFGRNTSCCRYTPYNRLKQICCYP 535
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 276 KIKEKSFNRNGDCCRTGPKYKLKQ-CLYP 359
++ + F RN CCR P +LKQ C YP
Sbjct: 565 RVVPRRFGRNTSCCRYTPYNRLKQICCYP 593
>SB_38551| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
Length = 1357
Score = 31.5 bits (68), Expect = 0.77
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 276 KIKEKSFNRNGDCCRTGPKYKLKQ-CLYP 359
++ + F RN CCR P +LKQ C YP
Sbjct: 167 RVVSRRFGRNTSCCRYTPYNRLKQICCYP 195
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 276 KIKEKSFNRNGDCCRTGPKYKLKQ-CLYP 359
++ + F RN CCR P +LKQ C YP
Sbjct: 51 RVVPRRFGRNTSCCRYTPYNRLKQICCYP 79
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 276 KIKEKSFNRNGDCCRTGPKYKLKQ-CLYP 359
++ + F RN CCR P +LKQ C YP
Sbjct: 283 RVVPRRFGRNTSCCRYTPYNRLKQICCYP 311
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 276 KIKEKSFNRNGDCCRTGPKYKLKQ-CLYP 359
++ + F RN CCR P +LKQ C YP
Sbjct: 341 RVVPRRFGRNTSCCRYTPYNRLKQICCYP 369
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 276 KIKEKSFNRNGDCCRTGPKYKLKQ-CLYP 359
++ + F RN CCR P +LKQ C YP
Sbjct: 399 RVVPRRFGRNTSCCRYTPYNRLKQICCYP 427
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 276 KIKEKSFNRNGDCCRTGPKYKLKQ-CLYP 359
++ + F RN CCR P +LKQ C YP
Sbjct: 515 RVVPRRFGRNTSCCRYTPYNRLKQICCYP 543
>SB_45460| Best HMM Match : Keratin_B2 (HMM E-Value=0.11)
Length = 759
Score = 31.5 bits (68), Expect = 0.77
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 276 KIKEKSFNRNGDCCRTGPKYKLKQ-CLYP 359
++ + F RN CCR P +LKQ C YP
Sbjct: 326 RVVSRRFGRNTSCCRYTPYNRLKQICCYP 354
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 276 KIKEKSFNRNGDCCRTGPKYKLKQ-CLYP 359
++ + F RN CCR P +LKQ C YP
Sbjct: 152 RVVPRRFGRNTSCCRYTPYNRLKQICCYP 180
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 276 KIKEKSFNRNGDCCRTGPKYKLKQ-CLYP 359
++ + F RN CCR P +LKQ C YP
Sbjct: 210 RVVPRRFGRNTSCCRYTPYNRLKQICCYP 238
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 276 KIKEKSFNRNGDCCRTGPKYKLKQ-CLYP 359
++ + F RN CCR P +LKQ C YP
Sbjct: 442 RVVPRRFGRNTSCCRYTPYNRLKQICCYP 470
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 276 KIKEKSFNRNGDCCRTGPKYKLKQ-CLYP 359
++ + F RN CCR P +LKQ C YP
Sbjct: 674 RVVPRRFGRNTSCCRYTPYNRLKQICCYP 702
>SB_37549| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)
Length = 309
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 276 KIKEKSFNRNGDCCRTGPKYKLKQ-CLYP 359
++ + F RN CCR P +LKQ C YP
Sbjct: 142 RVVPRRFGRNTSCCRYTPYNRLKQICCYP 170
>SB_29040| Best HMM Match : Keratin_B2 (HMM E-Value=0.44)
Length = 319
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 276 KIKEKSFNRNGDCCRTGPKYKLKQ-CLYP 359
++ + F RN CCR P +LKQ C YP
Sbjct: 94 RVVPRRFGRNTSCCRYTPYNRLKQICCYP 122
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 276 KIKEKSFNRNGDCCRTGPKYKLKQ-CLYP 359
++ + F RN CCR P +LKQ C YP
Sbjct: 210 RVVPRRFGRNTSCCRYTPYNRLKQICCYP 238
>SB_1365| Best HMM Match : Keratin_B2 (HMM E-Value=0.35)
Length = 348
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 276 KIKEKSFNRNGDCCRTGPKYKLKQ-CLYP 359
++ + F RN CCR P +LKQ C YP
Sbjct: 109 RVVPRRFGRNTSCCRYTPYNRLKQICCYP 137
>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 3 DTKYCIADRINTILKNLRLYYKKTRRSLQQVGGPIIRLTSGIE--VVGIIVSNAKNDENA 176
D + + + I N +L Y+KT+R + VG +R S ++ +V I+V + ++
Sbjct: 607 DLHFGVNSQTGAIRLNKKLDYEKTKRYVFLVGAIDVRTASPVDTVLVRILVQDVNDNRPE 666
Query: 177 YYPY 188
+Y Y
Sbjct: 667 FYQY 670
>SB_46993| Best HMM Match : Toxin_23 (HMM E-Value=2.3)
Length = 225
Score = 29.5 bits (63), Expect = 3.1
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +2
Query: 467 GTVPDVKYCTPSYEREDRLF*ALY-NKRCAIVNVGYCSLDFPGKKKSFSQNIPLLHPKYS 643
G +P +K+ +Y R+ R+ +Y + N+ CS P + KSF++ P
Sbjct: 109 GNLPHIKF--KNYNRKMRVLFVVYADFESFTENIDTCS---PDESKSFTKQYQKHKPSGF 163
Query: 644 LYTDLCSENGQDPCLLVRFSA 706
Y C + P LVR++A
Sbjct: 164 CYLIKCFDGDISPSELVRYTA 184
>SB_51323| Best HMM Match : LicD (HMM E-Value=0.0088)
Length = 695
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +2
Query: 467 GTVPDVKYCTPSYEREDRLF*ALY-NKRCAIVNVGYCSLDFPGKKKSFSQNIPLLHPKYS 643
G +P +K+ +Y R+ R+ +Y + N+ CS P KSF++ P
Sbjct: 8 GNLPHIKF--KNYNRKMRVPFVVYADFESFTENIDTCS---PDGSKSFTKQYQKHRPSGF 62
Query: 644 LYTDLCSENGQDPCLLVRFSA 706
Y + C + P LVR++A
Sbjct: 63 CYLNKCFDGDISPSELVRYTA 83
>SB_27318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 623 LLHPKYSLYTDLCSENGQDPCLLVRFSAIKVVCVCGSTHF 742
++ P YS YTD C Q +++ + VV + G F
Sbjct: 296 IVQPNYSAYTDYCLRRTQGTLVMLNCAMTPVVTLYGGRQF 335
>SB_10630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -3
Query: 364 EIGYRHCLSLYFGPVRQQSP--LRLNDFSLIFQILKAVRSLLIMNFCTESLKAVAGTA 197
E G CL + VRQQSP LR++ SL F++L A+ N+ T + + TA
Sbjct: 7 ETGKCSCLKIQQVFVRQQSPMGLRVSICSLRFRVLIALGRERTENYSTLGYELITRTA 64
>SB_41355| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 992
Score = 27.9 bits (59), Expect = 9.5
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +2
Query: 467 GTVPDVKYCTPSYEREDRLF*ALY-NKRCAIVNVGYCSLDFPGKKKSFSQNIPLLHPKYS 643
G +P +K+ +Y R+ R+ +Y + N+ CS P + KSF++ P
Sbjct: 475 GNLPHIKF--KNYNRKMRVPFVVYADFESFTENIDTCS---PDESKSFTKQYQKHKPSGF 529
Query: 644 LYTDLCSENGQDPCLLVRFSA 706
Y C + P LVR++A
Sbjct: 530 CYLIKCFDGDISPSELVRYTA 550
>SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)
Length = 1531
Score = 27.9 bits (59), Expect = 9.5
Identities = 22/69 (31%), Positives = 30/69 (43%)
Frame = +3
Query: 90 QVGGPIIRLTSGIEVVGIIVSNAKNDENAYYPYVNMAVPATAFKDSVQKFMISKDRTAFK 269
Q GG + TS G N KN N P +N AF DS++ F S+D +K
Sbjct: 899 QGGGWTLVATSKTHT-GWSADNVKN-RNPNNPSLNADYSIMAFADSIKNFDTSQDYFQYK 956
Query: 270 IWKIKEKSF 296
I + +F
Sbjct: 957 IEAENKNTF 965
>SB_15820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1998
Score = 27.9 bits (59), Expect = 9.5
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +2
Query: 467 GTVPDVKYCTPSYEREDRLF*ALY-NKRCAIVNVGYCSLDFPGKKKSFSQNIPLLHPKYS 643
G +P +K+ +Y R+ R+ +Y + N+ CS P + KSF++ P
Sbjct: 550 GNLPHIKF--KNYNRKMRVPFVVYADFESFTENIDTCS---PDESKSFTKQYQKHKPSGF 604
Query: 644 LYTDLCSENGQDPCLLVRFSA 706
Y C + P LVR++A
Sbjct: 605 CYLIKCFDGDISPSELVRYTA 625
>SB_56692| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1e-04)
Length = 963
Score = 27.9 bits (59), Expect = 9.5
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +2
Query: 467 GTVPDVKYCTPSYEREDRLF*ALY-NKRCAIVNVGYCSLDFPGKKKSFSQNIPLLHPKYS 643
G +P +K+ +Y R+ R+ +Y + N+ CS P + KSF++ P
Sbjct: 130 GNLPHIKF--KNYNRKMRVPFVVYADFESFTENIDTCS---PDESKSFTKQYQKHKPSGF 184
Query: 644 LYTDLCSENGQDPCLLVRFSA 706
Y C + P LVR++A
Sbjct: 185 CYLIKCFDGDISPSELVRYTA 205
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,568,364
Number of Sequences: 59808
Number of extensions: 446919
Number of successful extensions: 1208
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -