Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0063
         (785 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               29   4.3  
SB_58299| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.42)             28   7.5  
SB_46703| Best HMM Match : Extensin_2 (HMM E-Value=1.4)                28   7.5  
SB_38082| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_57721| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_4571| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_48805| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-32)                 28   9.9  

>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 634 LRSQV*LQRLPRPSNRNASLLHGRKVMVPTRADSQEV 744
           LR Q  +QR P P+ RN+  LHG +    T  +  ++
Sbjct: 24  LRQQNQVQRRPEPTPRNSIFLHGLRAQTATNFNQPQM 60


>SB_58299| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.42)
          Length = 329

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 637 RSQV*LQRLPRPSNRNASLLHGRKVMVPTRA 729
           RSQ   + LPRPSN N S+L    V  P  A
Sbjct: 75  RSQAVQRELPRPSNVNTSVLRPTNVEPPLSA 105


>SB_46703| Best HMM Match : Extensin_2 (HMM E-Value=1.4)
          Length = 564

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -2

Query: 235 KTNQRSGNFFNYYPKIFLCKLILPHGEEPKKMK 137
           +T+ R+G+FF  +P+I L K+++      KK+K
Sbjct: 34  RTSVRNGSFFAEFPRIELSKIVIIIHSWAKKLK 66


>SB_38082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -2

Query: 235 KTNQRSGNFFNYYPKIFLCKLILPHGEEPKKMK 137
           +T+ R+G+FF  +P+I L K+++      KK+K
Sbjct: 9   RTSVRNGSFFAEFPRIELSKIVIIIHSWAKKLK 41


>SB_57721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -2

Query: 235 KTNQRSGNFFNYYPKIFLCKLILPHGEEPKKMK 137
           +T+ R+G+FF  +P+I L K+++      KK+K
Sbjct: 9   RTSVRNGSFFAEFPRIELSKIVIIIHSWAKKLK 41


>SB_4571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 737

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -2

Query: 235 KTNQRSGNFFNYYPKIFLCKLILPHGEEPKKMK 137
           +T+ R+G+FF  +P+I L K+++      KK+K
Sbjct: 34  RTSVRNGSFFAEFPRIELSKIVIIIHSWAKKLK 66


>SB_48805| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-32)
          Length = 427

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 639 VSSIVTTA-APPFKPKRITASRQKGDGTYPCRLTRGPTTSKHLLQEQ 776
           +SS+ T++ +P F P+       +GD +   R+TR  +T   ++Q++
Sbjct: 275 ISSVSTSSLSPDFSPQASPTKSTEGDYSRRSRITRTVSTHSRIIQQR 321


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,079,316
Number of Sequences: 59808
Number of extensions: 572789
Number of successful extensions: 1207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)