Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0060
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42245| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   5e-14
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_53421| Best HMM Match : Arf (HMM E-Value=0)                         29   3.1  
SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)                    29   4.1  
SB_6522| Best HMM Match : Cyclotide (HMM E-Value=6.8)                  28   7.2  
SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_42245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 28/47 (59%), Positives = 42/47 (89%)
 Frame = +2

Query: 518 PAWWSWCLENKLYACMMMFFLANMIEGQLISSGAFEISLNNIPLWSK 658
           P  ++W + NK+Y+C+++FFL+NMIEGQLIS+GAFE+S N++P+WSK
Sbjct: 27  PEIYTWAVNNKMYSCILIFFLSNMIEGQLISTGAFEVSFNDMPVWSK 73


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 705  LLFETIQMVADSSSLYLDQSGMLLRDISKAPEDISCPSII 586
            ++ E  ++VAD    YL + GM  R +S+A ED  CP ++
Sbjct: 1057 MVIEKFEVVADPLRYYLCEVGMGKRGVSRALEDKDCPLLL 1096


>SB_53421| Best HMM Match : Arf (HMM E-Value=0)
          Length = 625

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 410 WVIVSSNDRNLWVFLLYNSCIVFKYLFVATRITVID 303
           W+     +   WVFL++N+C VF +    T +T I+
Sbjct: 151 WMATQIRNNKYWVFLVFNTC-VFAHFDRVTSLTFIN 185


>SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2047

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +2

Query: 47  YKIENIRPPKNKYSVVKR-NNHCESNDLHPFIY*I--RLEKISVCQTICFT 190
           Y ++++RPP N+   ++R  + C S+ L P I  I   L    +C T CF+
Sbjct: 418 YHVDDLRPPTNEIPPIERLIDTCISDLLRPGINSIINTLHMFRICVTKCFS 468


>SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 572 TSSCMHTACFQGTNSTKQVVVFQPSKNIHTAEYTHDDQHFAKTNNS 435
           TSS  HT   Q T+ST+Q    QP+ +      T    +  +T+N+
Sbjct: 366 TSSTQHTTNTQLTSSTQQTSSMQPTTDTQQTTNTQQTSNTQQTSNT 411


>SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)
          Length = 1276

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = +3

Query: 363  QQKYPEISVIGANYDPPGFNMYLSRIIGFGKMLVIMCILSGVNIFAWLKNHNLLGGVGAL 542
            ++K PEIS+ G NY    FN+ L + +G  ++  I  +L+   +  WL+   L       
Sbjct: 936  REKPPEISLKGVNY----FNLLLLQTVGDTEVAAI--LLNSKRLMEWLQ-QGLTCLTSLN 988

Query: 543  KTSCMHA 563
             TSC H+
Sbjct: 989  ITSCSHS 995


>SB_6522| Best HMM Match : Cyclotide (HMM E-Value=6.8)
          Length = 292

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 651 GPNRDWKNPQPSELFQIIDNTLQFLNGPPKNL 746
           GP++  KN    + +Q  DNT  F+N  P +L
Sbjct: 124 GPSKSCKNGLDCDCYQYADNTTFFVNSKPCDL 155


>SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1958

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -2

Query: 687  QMVADSSSLYLDQSGMLLRDISKAPEDISCPSIIFAKKNII 565
            Q+++D    +L +S  +  D+ +   DI  PS++FA +  I
Sbjct: 1732 QLMSDRGKHFLSESLSMYLDVKQKDWDIFIPSVLFAHRTSI 1772


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,056,644
Number of Sequences: 59808
Number of extensions: 545477
Number of successful extensions: 1260
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)